Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq66944 206 3e-48 seq66648 96.9 4e-15 >seq66944 Length=5658 Score = 206 bits (228), Expect = 3e-48 Identities = 381/554 (69%), Gaps = 21/554 (4%) Strand=Plus/Minus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTATGGCAGGT 41932 || || || ||||| |||| ||| | || |||| ||||| || ||||| ||| | ||| Sbjct 1957 CGCTTCTACGATGCTATTTCAACTTTTAAAATTTCTTTGCCCACACCAATCATGTCCGGT 1898 Query 41933 GCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTTA 41992 | || || || | |||||||||| | || ||| | ||||| |||||||| | Sbjct 1897 GTACGCACACCTATTCGCCAGTTCAGTTCCTGCGTACTAATTGAGTCCGGTGATAGCCTC 1838 Query 41993 AAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTATC 42052 | || ||||| ||||||| ||||| | ||||| |||| |||| |||||||| Sbjct 1837 GATTCGATTAATGCAACTTCAAGTGCAATTGTGAAATATGTTTCCCAACGGGCTGGTATT 1778 Query 42053 GGTATCAACGTTGGTATGCTTCGTGCA---GAAGGTTCTAAGATCGGTATGGGTGAAGTT 42109 || || || | ||| ||||||| | | |||| ||| || || |||| | Sbjct 1777 GGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAGTTC---GATACGTGACGGCGAAGCT 1721 Query 42110 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 42169 ||||||||| ||| ||||| | ||||| || || || ||||| |||||||||||| Sbjct 1720 TTTCATACGGGTTGTATCCCATTTTATAAACACTTTCAGACCGCAGTTAAATCTTGTTCT 1661 Query 42170 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 42229 ||||||||| | || ||||||||||| ||| | ||||| || |||||||| ||||| Sbjct 1660 CAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTATCCAATATGGCACTTGGAAGTG 1601 Query 42230 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATG 42289 || | || | || |||| |||||| ||||| || || |||||| |||| || ||| Sbjct 1600 GAAAGTTTACTGGTCTTGAAGAATAACCGTGGCGTAGAAGATAACCGTGTTCGTCACATG 1541 Query 42290 GACTACGGAATTCAGATTAATGACCTTATGATGGAACGCCT-----TGGTAAAAATGATT 42344 ||||| || |||| | ||| | || ||| | ||||| || || | Sbjct 1540 GACTATGGTGTTCAATTGAATAAACTGATGTATCAGCGCCTACTCCAGGGAAGA-----G 1486 Query 42345 ATATTACTTTATTTAG-CCCTCACGAAATGTCAGGCGAACTATACTACTCGTTCTTTGAA 42403 |||||||| ||||||| || ||| || || |||| |||||| | | ||||||| Sbjct 1485 ATATTACTCTATTTAGTCCGTCA-GATGTGCCAGG---TCTATACGATGCATTCTTTGCT 1430 Query 42404 GATCAAGATAAATT 42417 ||||| || |||| Sbjct 1429 GATCAGGAAGAATT 1416 >seq66648 Length=2014 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 50604 GTGATGCGCGTTTATTTTGAAAAGCCTCGAACTACCGTAGGTTGGAAAGGTCTTG-TAAA 50662 || ||||| ||||| |||||||| || || ||||| || || |||||||| |||| | || Sbjct 440 GTAATGCGAGTTTACTTTGAAAAACCCCGTACTACTGTTGGCTGGAAAGG-CTTGATTAA 382 Query 50663 TGATCCATATCTTGACGGAAGTTTTGATATG-AACCACGGTCTT-ATAGTTGCACGAACA 50720 |||||| || | || | |||||||||| || || ||||| ||| |||||||| Sbjct 381 TGATCCGAATATGGATAACACTTTTGATATGGAAGCA-GGTCTACATA-TTGCACGACAG 324 Query 50721 TTGTGTCGTAAACTTCTACGTATGGGACTTCCATTAGCAACTGAAGTATTAGACCCATTC 50780 || | || ||| | |||||||||||| |||| ||||||| | | || || Sbjct 323 TTATTATTGAATCTTGTTGAGATGGGACTTCCACTAGCTACTGAAGCACTGGATCCTAAT 264 Query 50781 ACGATTAAGTATCTTTCTGGTATTTTCTCATGGGTTGCTATTGGCGCCCGTACGACTGAA 50840 | | |||||||| | | | ||| ||| |||||||| || || || || ||| Sbjct 263 AGTCCTCAGTATCTTGGCGATCTCTTCAGCTGGTCAGCTATTGGAGCACGCACTACAGAA 204 Query 50841 AGTCAGACACATCGTGAAATTGCTTCAGGT 50870 || || ||||||||||| || || ||| Sbjct 203 TCACAAACTCATCGTGAAATGGCCTCTGGT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539487324883520