Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq25273 129 1e-24 seq44371 120 7e-22 seq66858 95.1 3e-14 >seq25273 Length=2210 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||| || ||||| || || | || || ||||| | ||| Sbjct 1745 CGAAGACGAAGCACCAAATGGAGTGTCGATTCCTTCTGTATGTTATAGTCGGCTAGAGTA 1804 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| ||||| | ||||| || || || |||||||| Sbjct 1805 CGTCCGTCCTCCAGCTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGAGGAATACCC 1864 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| ||| ||| ||| || || || || | || || ||||| Sbjct 1865 TCCTTATCTTGGATCTTGGCCTTTACATTTTCAATAGTATCGGATGGCTCAACTTCTAAA 1924 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | || | |||||| Sbjct 1925 GTGATAGTCTTGCCTGTCAATGTCTTGACAAAAATTTGCAT 1965 >seq44371 Length=3624 Score = 120 bits (132), Expect = 7e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | || ||||| ||||| |||| || ||||| | || || ||| Sbjct 1125 GTAGATTCCTTTTGAATGTTATAATCAGCCAAGGTTCGTCCGTCTTCCAATTGTTTGCCA 1184 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 1185 GCGAAAATTAAGCGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGAATCTTAGCTTTA 1244 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || || || || | ||| || || | ||||| || || ||||| | |||| Sbjct 1245 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTAAGAGTT 1304 Query 225697 TTTATGAACACTTGCATTT 225715 || | || | |||||||| Sbjct 1305 TTAACAAAAATTTGCATTT 1323 >seq66858 Length=3072 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||||||||| ||||| || || | | |||||||| ||||| Sbjct 1159 GAAAATTTGACCATCAGTAATAGAGATTACATTGGTTGGAACGAATGCAGAAACGTCACC 1100 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||||| ||||||| | |||| |||||||| || ||| Sbjct 1099 TGCTTGGGTTTCGATGATTGGTAGCGCTGTTAGCGAACCA 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191508219904688