Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq66379 181 3e-41 seq66762 113 1e-20 >seq66379 Length=1582 Score = 181 bits (200), Expect = 3e-41 Identities = 395/588 (67%), Gaps = 10/588 (2%) Strand=Plus/Plus Query 27057 CACCATCGCGCACATGTTCAAGGCGTCCAAGCAGATCCTTGATGACTTCGCTCAACTGCA 27116 ||| || || || |||| ||||| |||||||||||| | ||||| || | ||||| Sbjct 876 CACGATTGCCCATCTGTTTAAGGCATCCAAGCAGATCTTGGATGATTTTTCGCAACTAGC 935 Query 27117 GTCGACCGTGGACACCGAGATGCGCTTCGGCCTGAAGTATGTCGAAGAGCAGGAGATCCT 27176 || | || | ||| |||| | |||||||| || || ||||| ||| | ||| | Sbjct 936 TTCCCTTATCGATATGGAGTTGCGTTATGGCCTGAAATACGTGGAAGAACAGCAAATCTT 995 Query 27177 GTTCGGCGATGGCACCGGCGCGCACCTCGACGGCATCGTGCCGCAAGCCTCTGCGTTCAG 27236 |||||| || || || ||| | |||| |||| || | | || || | || || | Sbjct 996 GTTCGGTGACGGTACAGGCTCAAACCTGAACGGTATTTTCACTCAGGCTACCGCATTTAA 1055 Query 27237 CGCCGCCTTCGCGGTCGAGCAGCAGAACGGTATCGATGACCTGCGCCTGGCGATGCTGCA 27296 | | || | ||||| | || || ||||| |||||||| || ||||| || Sbjct 1056 AACGGAATTAAAACCAGCGCAGCGAACCGCGATTGATGATCTGCGCCTTGCCATGCTACA 1115 Query 27297 GGCCCAGCTGGCGCGCCTGCCGGCATCCGGCCACGTTCTGCACTTCATCGACTGGGCGAA 27356 || || ||||| || | || ||| | ||||| || |||| || | | ||||||| | Sbjct 1116 AGCGCAACTGGCACGTATCCCAGCAACAGGCCATGTGTTGCATTTTACCAACTGGGCACA 1175 Query 27357 GATCGAGCTGACCAAGGACACCCTGGGCCGCTACATCCTCGCCAA-CCCGCTGGGCCTGG 27415 || ||||| | |||||| || ||||| || || ||||| |||| ||||| | || || Sbjct 1176 AATTGAGCTAATCAAGGATACGCTGGGGCGTTATCTCCTCTCCAATCCCGCCGCGC-TGA 1234 Query 27416 CCGGCCCGCTGCTGTGGGGCCTGCCGGTGGTTGCCACTGAA----ATCGCCGCGTTCCAG 27471 | || |||||||| | || || |||| || ||| ||| || | Sbjct 1235 CTACACCAACATTGTGGGGCTTACCCGTTGTTGTTACAGAAGCTAATCAA----TTTAAA 1290 Query 27472 GGCAAGTTCCTGACTGGTGCGTTCCAGACCGGCGCGCAGATCTTCGATCGCGAAGACGCC 27531 | || || || ||| || ||| || ||||| | || || |||||||| || Sbjct 1291 GATAAATTTATGGTTGGCGCATTCAGTTTAGGGGCGCAACTATTTGACCGCGAAGAAGCA 1350 Query 27532 AACGTGGTGATCTCCACCGAGAACGCCGACGACTTCGAGAAGAACATGATCTCGATCCGT 27591 || ||||||||| ||| || || ||||||| || ||||||||||||||||| || ||| Sbjct 1351 AATGTGGTGATCAGCACTGAAAATACCGACGATTTTGAGAAGAACATGATCTCTATTCGT 1410 Query 27592 TGCGAAGAGCGCCTGGCGCTGGCCGTGAAGCGCCCCGAGGCGTTCATC 27639 || |||||||| |||| || || || | || ||||| || || ||| Sbjct 1411 TGTGAAGAGCGGTTGGCACTCGCGGTTTACCGTCCCGAAGCCTTTATC 1458 >seq66762 Length=2443 Score = 113 bits (124), Expect = 1e-20 Identities = 237/352 (67%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 24980 GTCGAGGAGATGTGTCGTTGGTTCCGCGTCCCGCCGTTCATGGTGGGGCACATGGACAAG 25039 ||||| || || || ||||||| ||||| |||||||| ||||| || || || || Sbjct 412 GTCGAAGAAATCTGCCGTTGGTATCGCGTTCCGCCGTTTATGGTCGGTCATATTACAAAA 353 Query 25040 CAGTCCAGCTGGGCCAGCTCTGTGGAGGCGCAGAACCTCCACTTCCTGACCAATAGCCTC 25099 || ||| ||||| ||| || | | |||||| ||| | ||||||| | Sbjct 352 CAAAGCAGTTGGGCTTCAAGTGTAGAAGGGATGAACCTGATTTTCTTAACCAATACATTA 293 Query 25100 CGGCCGCTGCTGGTGAACATCGAGCAGGAGATCACGCGCTGTCTGATCGGCGAGGCCGAT 25159 ||||| | ||||| || || || ||||| || | ||||||||| | | | | ||| Sbjct 292 CGGCCCTTACTGGTCAATATTGAACAGGAAATTGCCCGCTGTCTGCTGGATAATGACGA- 234 Query 25160 GCGGATGAGTTCTTCGCCGAGTTCGCAGTTGAGGGGCTGCTGCGCGCCGACAGCACCGCC 25219 |||| | || || || || | ||||| || ||||| | |||| ||||| | | Sbjct 233 --GGATTATTTT---GCGGAATTTTCTGTTGAAGGACTGCTCAGAACCGATAGCACAGGC 179 Query 25220 CGTGCGGCTTGGTACAACACTGCACTGCAGAACGGCTGGATGAGCCGTAACGAGGTCCGT 25279 || || || | |||| || ||||| || || ||||||||||| || || || || | Sbjct 178 CGAGCAGCCTATTACACTACCGCACTACAAAATGGCTGGATGAGTCGCAATGATGTGAGG 119 Query 25280 CGCCTGGAAAACCTGCCACCAATCGAAGGCGGGGATGTCTTCACCGTGCAGT 25331 | |||||||| |||| || || || ||||| || | | ||||| |||| Sbjct 118 AGACTGGAAAATTTGCCGCCGATTGATGGCGGAGACCTGTATACCGTTCAGT 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133759169485392