Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq66944 215 6e-51 >seq66944 Length=5658 Score = 215 bits (238), Expect = 6e-51 Identities = 324/458 (71%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 43363 TTCTACAACGCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTG 43422 |||||| | || ||||| | ||| | || || || || || || ||| | ||||| Sbjct 1954 TTCTACGATGCTATTTCAACTTTTAAAATTTCTTTGCCCACACCAATCATGTCCGGTGTA 1895 Query 43423 CGTACTCCTACGCGTCAGTTTTCCAGTT---GCGTAGTGATTGAATCAGGTGATTCACTG 43479 || || |||| || ||||| ||||| ||||| | ||||| || |||||| || Sbjct 1894 CGCACACCTATTCGCCAGTT---CAGTTCCTGCGTACTAATTGAGTCCGGTGATAGCCTC 1838 Query 43480 GGTTCTCTGAATGCTGTAACCTC---TGCGATCGTGAAGTATATTTCACAACGCGCGGGT 43536 | ||| | ||||| ||| || ||| || ||||| ||| |||| ||||| || ||| Sbjct 1837 GATTCGATTAATGC---AACTTCAAGTGCAATTGTGAAATATGTTTCCCAACGGGCTGGT 1781 Query 43537 ATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCA 43596 || || ||||||| || | ||||| || |||| | || |||| || ||||| Sbjct 1780 ATTGGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAGTTCGATACGTGACGGCGAAGCT 1721 Query 43597 GTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCA 43656 | ||||| || ||||| || | ||||| ||||||| || |||||||| ||||| Sbjct 1720 TTTCATACGGGTTGTATCCCATTTTATAAACACTTTCAGACCGCAGTTAAATCTTGTTCT 1661 Query 43657 CAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTT 43716 |||||||| || || |||||||||||||| | | ||||| || ||||| |||||||| Sbjct 1660 CAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTATCCAATATGGCACTTGGAAGTG 1601 Query 43717 GAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAGAATAACCGTATTCGTCACCTG 43776 |||| | ||||| |||| || ||| || || || |||||||| |||||||| || Sbjct 1600 GAAAGTTTACTGGTCTTGAAGAATAACCGTGGCGTAGAAGATAACCGTGTTCGTCACATG 1541 Query 43777 GATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCG 43814 || ||||| ||||| | || | |||||||| |||| Sbjct 1540 GACTATGGTGTTCAATTGAATAAACTGATGTATCAGCG 1503 Score = 93.3 bits (102), Expect = 5e-14 Identities = 260/392 (66%), Gaps = 14/392 (4%) Strand=Plus/Minus Query 44599 CGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCA 44658 |||||||| ||||| || || | ||||| | ||| | || || || ||| | Sbjct 706 CGTAACTCTACTCTATCTGCACTGATGCCTTCTGAAACATCATCGCAGATATCTAACGCG 647 Query 44659 ACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCA 44718 || || || |||||||| ||||| |||| | | || | ||| | || ||||| || || Sbjct 646 ACCAATGGTATTGAACCACCTCGTGGTCATATCAGCATTAAAGCATCAAAAGATGG--CA 589 Query 44719 TTCAAC--CAGGTAGTACCGAACCA-GAACGATCAGATTGATTTCTATGATTATCTCTGG 44775 ||| | || || |||||| | | || || || | ||| ||||| || ||| Sbjct 588 TTCTTCGCCAAGTCGTACCGGAATATGAGCG-TCTAAAAGATAGTTATGAAATGCTGTGG 530 Query 44776 ACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTT 44835 ||| |||| |||| | |||||| | | |||| | | |||||||||||| Sbjct 529 GATATGCCAAA------TAATGATGGTTATTTACAGCTGGTTGGTCTGATGCAGAAGTTT 476 Query 44836 GTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAA 44895 | |||||||| || || | || || ||||||||||| ||| |||||||| Sbjct 475 ATCGATCAAGCAATTTCATCTAATACTAACTATGATCCAATGCGCTTTGTTAATGGTAAA 416 Query 44896 GTGAAATCTGAAACCA-TCATTGATGACCTGCTTTATGCGAACTACTACGGCGTGAAAAC 44954 || | |||||| | | || | || |||||| ||| | | | ||||| ||||| Sbjct 415 GT-ACCAATGAAACAACTACTTAAAGATCTGCTTACTGCCTATAAGTTTGGCGTAAAAAC 357 Query 44955 TCTGTATTATCACAACACCCGCGACGGTGCAG 44986 |||||| ||||| || ||||| || ||||||| Sbjct 356 TCTGTACTATCAAAATACCCGGGATGGTGCAG 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576090266223680