Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq66944 233 2e-56 >seq66944 Length=5658 Score = 233 bits (258), Expect = 2e-56 Identities = 324/453 (72%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 |||||| ||||| | ||||| ||||| || | ||||||| |||||| || ||||| || Sbjct 1511 CATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCC 1570 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 ||| ||||| | || || | |||| |||||||||||||| ||||||||| | || Sbjct 1571 ACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAG 1630 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 ||| || || ||||| || || |||||||| || || ||||||||||| || || ||||| Sbjct 1631 TGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTG 1690 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATG------TTTGACTTCACCGAATCCAATTTTTGA 141478 ||| | || || ||| || ||||| || | | ||| || ||| || || Sbjct 1691 TTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCCGTCA-CGTATCGAACTT---- 1745 Query 141479 ACCCTCGGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTT 141538 ||| ||| ||||| || |||||||| |||||||| || || | | ||||| Sbjct 1746 -CCCAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTT 1804 Query 141539 CGTAATTGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCAC 141598 | ||||| | || | | ||||| |||| || |||||||| ||||| | || Sbjct 1805 CACAATTGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTAC 1864 Query 141599 GCATGAACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGA 141658 ||| |||||||||||||| | || || || ||||| ||||| |||||||| ||||| || Sbjct 1865 GCAGGAACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGA 1924 Query 141659 AATCTTTTTAGTAGAAACTGCATCATAGAAACG 141691 ||| || ||| |||| ||||| ||||| || Sbjct 1925 AATTTTAAAAGTTGAAATAGCATCGTAGAAGCG 1957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 140313 GGAACGACTTGGTTGAAACTTCCTTCTTTTGATTCTTTAA--CTGACACTGGTCCACGTG 140370 || ||||||||| | | | || ||||||||| |||||| |||| | | ||||| | Sbjct 570 GGTACGACTTGGCGAAGAATGCCATCTTTTGATGCTTTAATGCTGATAT--GACCACGAG 627 Query 140371 GTGGTTCAATACCGTTGGTAGAGTTTGATACCTGGCTTGACGATTCGCATGGCATAAGCG 140430 ||||||||||||| ||||| | ||| |||| ||| ||| | ||| | ||||| || | Sbjct 628 GTGGTTCAATACCATTGGTCGCGTTAGATATCTGCGATGATGTTTCAGAAGGCATCAGTG 687 Query 140431 CAGATAGCGTTGAATTTCGGATACCGTA 140458 ||||||| || || || || | |||||| Sbjct 688 CAGATAGAGTAGAGTTACGTAGACCGTA 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537891861245440