Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq66944 212 7e-50 seq66648 96.9 4e-15 >seq66944 Length=5658 Score = 212 bits (234), Expect = 7e-50 Identities = 382/554 (69%), Gaps = 21/554 (4%) Strand=Plus/Minus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 61755 || || || ||||| |||| ||| | || |||| ||||| || ||||| ||| | ||| Sbjct 1957 CGCTTCTACGATGCTATTTCAACTTTTAAAATTTCTTTGCCCACACCAATCATGTCCGGT 1898 Query 61756 GCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTTA 61815 | || || || | |||||||||| | || ||| | ||||| |||||||| | Sbjct 1897 GTACGCACACCTATTCGCCAGTTCAGTTCCTGCGTACTAATTGAGTCCGGTGATAGCCTC 1838 Query 61816 AAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTATA 61875 | || ||||| ||||||| ||||| | ||||| |||| |||| |||||||| Sbjct 1837 GATTCGATTAATGCAACTTCAAGTGCAATTGTGAAATATGTTTCCCAACGGGCTGGTATT 1778 Query 61876 GGTATCAACGTTGGTATGCTTCGTGCA---GAAGGTTCTAAGATCGGTATGGGCGAAGTT 61932 || || || | ||| ||||||| | | |||| ||| || ||||||| | Sbjct 1777 GGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAGTTC---GATACGTGACGGCGAAGCT 1721 Query 61933 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 61992 ||||||||| ||| ||||| | ||||| || || || ||||| |||||||||||| Sbjct 1720 TTTCATACGGGTTGTATCCCATTTTATAAACACTTTCAGACCGCAGTTAAATCTTGTTCT 1661 Query 61993 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 62052 ||||||||| | || ||||||||||| ||| | ||||| || |||||||| ||||| Sbjct 1660 CAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTATCCAATATGGCACTTGGAAGTG 1601 Query 62053 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATG 62112 || | || | || |||| |||||| ||||| || || |||||| |||| || ||| Sbjct 1600 GAAAGTTTACTGGTCTTGAAGAATAACCGTGGCGTAGAAGATAACCGTGTTCGTCACATG 1541 Query 62113 GACTACGGAATTCAGATTAATGACCTTATGATGGAACGCCT-----TGGTAAAAATGATT 62167 ||||| || |||| | ||| | || ||| | ||||| || || | Sbjct 1540 GACTATGGTGTTCAATTGAATAAACTGATGTATCAGCGCCTACTCCAGGGAAGA-----G 1486 Query 62168 ATATTACTTTATTTAG-CCCTCACGAAATGTCAGGCGAACTATACTACTCGTTCTTTGAA 62226 |||||||| ||||||| || ||| || || |||| |||||| | | ||||||| Sbjct 1485 ATATTACTCTATTTAGTCCGTCA-GATGTGCCAGG---TCTATACGATGCATTCTTTGCT 1430 Query 62227 GATCAAGATAAATT 62240 ||||| || |||| Sbjct 1429 GATCAGGAAGAATT 1416 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 62896 GACTGGGAAGAACTTCGAGCTGAACTCAAAGAACATGGAATTCGTAACTCAACGTTGTCT 62955 |||||||||||||| || | | | |||| | || | |||||||| || | ||| Sbjct 748 GACTGGGAAGAACTACGCGAATCAATTAAAGTCTACGGTCTACGTAACTCTACTCTATCT 689 Query 62956 GCACTCATGCCTTGTGAGTCAAGCAGTCAAGTATCTAACTCTACAAACGGGATTGAACCG 63015 ||||| ||||||| ||| || || |||||||| | || || || |||||||| Sbjct 688 GCACTGATGCCTTCTGAAACATCATCGCAGATATCTAACGCGACCAATGGTATTGAACCA 629 Query 63016 CCGCGTGGTCCAGTGAGTATTAAAGAATCTAAAGAAGGCA 63055 || ||||||| | || ||||||| ||| ||||| |||| Sbjct 628 CCTCGTGGTCATATCAGCATTAAAGCATCAAAAGATGGCA 589 >seq66648 Length=2014 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 70422 GTGATGCGCGTTTATTTTGAAAAGCCTCGAACTACCGTAGGTTGGAAAGGTCTTG-TAAA 70480 || ||||| ||||| |||||||| || || ||||| || || |||||||| |||| | || Sbjct 440 GTAATGCGAGTTTACTTTGAAAAACCCCGTACTACTGTTGGCTGGAAAGG-CTTGATTAA 382 Query 70481 TGATCCATATCTTGACGGAAGTTTTGATATG-AACCACGGTCTT-ATAGTTGCACGAACA 70538 |||||| || | || | |||||||||| || || ||||| ||| |||||||| Sbjct 381 TGATCCGAATATGGATAACACTTTTGATATGGAAGCA-GGTCTACATA-TTGCACGACAG 324 Query 70539 TTGTGTCGTAAACTTCTACGTATGGGACTTCCATTAGCAACTGAAGTATTAGACCCATTC 70598 || | || ||| | |||||||||||| |||| ||||||| | | || || Sbjct 323 TTATTATTGAATCTTGTTGAGATGGGACTTCCACTAGCTACTGAAGCACTGGATCCTAAT 264 Query 70599 ACGATTAAGTATCTTTCTGGTATTTTCTCATGGGTTGCTATTGGCGCCCGTACGACTGAA 70658 | | |||||||| | | | ||| ||| |||||||| || || || || ||| Sbjct 263 AGTCCTCAGTATCTTGGCGATCTCTTCAGCTGGTCAGCTATTGGAGCACGCACTACAGAA 204 Query 70659 AGTCAGACACATCGTGAAATTGCTTCAGGT 70688 || || ||||||||||| || || ||| Sbjct 203 TCACAAACTCATCGTGAAATGGCCTCTGGT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542205048515520