Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq19295 114 3e-20 seq19781 95.1 3e-14 seq19297 93.3 9e-14 seq19813 89.7 1e-12 seq17726 89.7 1e-12 seq5985 89.7 1e-12 seq1640 89.7 1e-12 >seq19295 Length=205138 Score = 114 bits (126), Expect = 3e-20 Identities = 286/432 (66%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 281469 ATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATC 281528 |||| ||| |||| ||||| ||||| || ||||||| || ||| | || Sbjct 36447 ATTTCGCCTCTGAAGCCCTTATACCATGGCTTCATTTTTTTTAGTGGCTCGTCGTTAATT 36506 Query 281529 AAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAA 281588 ||||| || | ||| | || || ||| ||||| ||| | || | ||||| ||| Sbjct 36507 AAACGTTTGATGTTTGCGACAATCTCTCGAGGATTGTAATTTGGCACCTTAGTGCTCCAG 36566 Query 281589 CCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACAT 281648 || || || ||||| | ||| || || || || | || |||||||| | ||| | Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 281649 TCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTATCG 281708 || |||||||| || | ||||||| | | ||| || || | | |||||| | | Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGT- 36685 Query 281709 ACGAAA-ACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG 281767 | |||| | ||| | | ||| | ||||| ||||| || ||||| | ||| Sbjct 36686 AGGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACGCAGA 36745 Query 281768 GTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTT 281827 ||||| ||||||||||||| | || || ||||| ||| || ||| ||||| Sbjct 36746 ATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATGTT 36805 Query 281828 ATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACC 281887 ||| || || ||| ||| || |||| ||||||||||||| | ||||| ||||| Sbjct 36806 ATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTCACC 36865 Query 281888 GTGGTGATAGGC 281899 ||||||||| || Sbjct 36866 GTGGTGATACGC 36877 >seq19781 Length=225169 Score = 95.1 bits (104), Expect = 3e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 165700 TAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 |||||| | |||||| ||||||||||||||||||| ||||| ||||||| |||||| Sbjct 18930 TAAAAC-CGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 18988 Query 165760 GGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||| ||||| Sbjct 18989 GGGTTCGAGCCCCACGTTGGGC 19010 >seq19297 Length=16901 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 5107 GCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 5048 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 5047 GAGCCCCACGTTGGGC 5032 >seq19813 Length=88314 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 61701 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 61760 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61761 CCCACGTTGGGC 61772 >seq17726 Length=138386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 116583 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116524 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 116523 CCCACGTTGGGC 116512 >seq5985 Length=300413 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 85468 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 85409 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 85408 CCCACGTTGGGC 85397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 86637 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 86578 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 86577 CCCACGTTGGGC 86566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 88406 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88347 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 88346 CCCACGTTGGGC 88335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 88988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88929 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 88928 CCCACGTTGGGC 88917 >seq1640 Length=50012 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 41329 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 41270 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41269 CCCACGTTGGGC 41258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057546860690240