Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq19295 114 3e-20
seq19781 95.1 3e-14
seq19297 93.3 9e-14
seq19813 89.7 1e-12
seq17726 89.7 1e-12
seq5985 89.7 1e-12
seq1640 89.7 1e-12
>seq19295
Length=205138
Score = 114 bits (126), Expect = 3e-20
Identities = 286/432 (66%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 281469 ATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATC 281528
|||| ||| |||| ||||| ||||| || ||||||| || ||| | ||
Sbjct 36447 ATTTCGCCTCTGAAGCCCTTATACCATGGCTTCATTTTTTTTAGTGGCTCGTCGTTAATT 36506
Query 281529 AAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAA 281588
||||| || | ||| | || || ||| ||||| ||| | || | ||||| |||
Sbjct 36507 AAACGTTTGATGTTTGCGACAATCTCTCGAGGATTGTAATTTGGCACCTTAGTGCTCCAG 36566
Query 281589 CCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACAT 281648
|| || || ||||| | ||| || || || || | || |||||||| | ||| |
Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626
Query 281649 TCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTATCG 281708
|| |||||||| || | ||||||| | | ||| || || | | |||||| | |
Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGT- 36685
Query 281709 ACGAAA-ACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG 281767
| |||| | ||| | | ||| | ||||| ||||| || ||||| | |||
Sbjct 36686 AGGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACGCAGA 36745
Query 281768 GTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTT 281827
||||| ||||||||||||| | || || ||||| ||| || ||| |||||
Sbjct 36746 ATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATGTT 36805
Query 281828 ATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACC 281887
||| || || ||| ||| || |||| ||||||||||||| | ||||| |||||
Sbjct 36806 ATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTCACC 36865
Query 281888 GTGGTGATAGGC 281899
||||||||| ||
Sbjct 36866 GTGGTGATACGC 36877
>seq19781
Length=225169
Score = 95.1 bits (104), Expect = 3e-14
Identities = 71/82 (87%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 165700 TAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759
|||||| | |||||| ||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 18930 TAAAAC-CGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 18988
Query 165760 GGGTTCGAGCCCCACGATGGGC 165781
|||||||||||||||| |||||
Sbjct 18989 GGGTTCGAGCCCCACGTTGGGC 19010
>seq19297
Length=16901
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765
|| |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 5107 GCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 5048
Query 165766 GAGCCCCACGATGGGC 165781
|||||||||| |||||
Sbjct 5047 GAGCCCCACGTTGGGC 5032
>seq19813
Length=88314
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 61701 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 61760
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 61761 CCCACGTTGGGC 61772
>seq17726
Length=138386
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 116583 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116524
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 116523 CCCACGTTGGGC 116512
>seq5985
Length=300413
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 85468 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 85409
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 85408 CCCACGTTGGGC 85397
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 86637 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 86578
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 86577 CCCACGTTGGGC 86566
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 88406 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88347
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 88346 CCCACGTTGGGC 88335
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 88988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88929
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 88928 CCCACGTTGGGC 88917
>seq1640
Length=50012
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 41329 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 41270
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 41269 CCCACGTTGGGC 41258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057546860690240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |