Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19563 390 1e-103 seq19464 167 3e-36 >seq19563 Length=274849 Score = 390 bits (432), Expect = 1e-103 Identities = 986/1490 (66%), Gaps = 28/1490 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 52854 |||||| | ||||| ||||| | |||| ||| || |||||||| || |||||||| Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950 Query 52855 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACT 52914 ||| || || ||||| || |||| || || || ||||| |||| ||| |||| | Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010 Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 | || |||| ||||| ||| | |||||||| ||||||||||||||||| | || || Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070 Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 53034 |||||| || ||||| | || ||||| || ||||| | || || | ||||| Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130 Query 53035 ATCTTCTGGAAGGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTC-TTG- 53092 | || ||||| || |||| | || ||| || | | || |||| ||| Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCA----TTATAAGCAACCAATTCGTTGC 230186 Query 53093 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 53150 ||| |||||||| | | | || |||| | || |||| ||||| |||| || | Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246 Query 53151 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 53210 ||||||| || || || || |||| || | ||| || || ||||| ||||| | | Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306 Query 53211 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 53270 | ||||| || || | ||| || || || |||||||| ||||||||||||| | | | Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366 Query 53271 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 |||| | | ||| ||| | || ||| ||||||| | |||| | ||||||| Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426 Query 53331 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCT 53386 || || ||| | ||||| | ||| |||| || ||| Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 | || || || || | |||||| || || | ||||| || || || || || ||| Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || || || || || ||||| || || || || |||||| | || ||||| || Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 || || | || || | ||| || | ||||| || ||||| || || |||| ||| Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662 Query 53567 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 53625 | ||||| | || || |||||||||| ||||| || |||| ||| ||||| || || Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721 Query 53626 GAGGTTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||||||| || | | ||||| || || || ||||| ||| ||||| | || | Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780 Query 53685 CTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 | | ||||| || | ||| | || || || || ||||| || | |||| || | Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | ||| | ||||| || || || | |||| |||||||| ||||| | |||||| | Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 |||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| | Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 | ||| | ||| || | ||| | | || | || || | | | Sbjct 230961 GACTTTCGAGAATGGCATACCAAAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCCT 231020 Query 53925 CTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 | | ||| ||| | || | | ||| ||||| | ||||||| | | || || | Sbjct 231021 CGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCCG 231080 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 |||||| || | |||||||| ||||||| || | |||| ||||| |||||| | Sbjct 231081 GACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAACA 231140 Query 54045 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 | ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || ||| Sbjct 231141 GGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGTA 231199 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 ||||| | ||||||||| | | ||||| | |||||| |||||||| || || | Sbjct 231200 TTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGCA 231259 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | | || |||| || || |||||||| || | |||| || |||||||| || || Sbjct 231260 AAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACACA 231319 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 | | |||||| | ||| ||||| |||| || || || || | ||||| Sbjct 231320 CGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 167 bits (184), Expect = 3e-36 Identities = 454/690 (66%), Gaps = 15/690 (2%) Strand=Plus/Plus Query 23820 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 |||| | || |||||| ||| ||| ||||||||||| || |||||||| || ||||| Sbjct 12011 TCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTC 12070 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATT--ATAGA 23937 ||||| ||||| | || || | ||||| || ||| | ||||| || || |||| Sbjct 12071 GTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGC 12130 Query 23938 TTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCA 23997 |||| | | | || | || | ||| || || ||||| || ||| | |||| Sbjct 12131 TTCTGGCAGTTG--AGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCA 12188 Query 23998 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTT 24057 ||| || || ||||| || | | || || | || |||| ||||||||||||| Sbjct 12189 TCAGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTT 12248 Query 24058 CAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC----TTCACTCGGTGGATAC 24113 | || | || ||||| | || ||| | | | ||| ||| || ||| | Sbjct 12249 CGATGGCAACAGCGTCCTTAAT----GATTTGATAGATTCGCGCTTCGCTTGGTTTGTTG 12304 Query 24114 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 24173 | | ||||| ||||||| ||| ||||| || ||| | ||| ||||| | || Sbjct 12305 ATCAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATG 12364 Query 24174 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 24233 | || ||| || ||||| || ||||| | || |||||||| ||||| || || | Sbjct 12365 AGCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCG 12424 Query 24234 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA 24293 ||||| | || || ||||| ||||| ||||| || || || | || | || || Sbjct 12425 GCAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCG 12484 Query 24294 TAACCGGCG--CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 24350 || | || || || | ||||||| | |||||||| |||||||| || | || Sbjct 12485 TACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCAT 12544 Query 24351 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTA 24410 ||||||||||| || || ||||| | ||| | || | | ||||| Sbjct 12545 GGCATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTG 12604 Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470 | | || |||| ||||||||| |||||||| ||||| || || ||||| |||||| Sbjct 12605 TTTAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAG 12664 Query 24471 AAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| | ||||||| | ||||||||| Sbjct 12665 AAACAACGCGCCTCGGGCACTTGTACTTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593569844759040