Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 104 2e-17
seq7231 95.1 1e-14
>seq19980
Length=299602
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||||||||| || ||||||| ||||| | | || || ||||| || ||
Sbjct 144932 GTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCG 144873
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | |||||| || || ||| | ||||||||||| ||||| ||
Sbjct 144872 GCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTT 144813
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | |||||| |||||| ||||| ||| |||||||| || || | |||
Sbjct 144812 ACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTT 144753
Query 21159 TTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 144752 TTGACGAAAATTTGCAT 144736
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || || ||||||| ||| | || ||||| ||||||||||| ||||| |
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||| ||||||||||| || |||| | || || || || |||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| || || ||| || | | | ||||| | ||||| |
Sbjct 145070 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACT 145011
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || || || ||||| | |||||| ||||| || |||||
Sbjct 145010 TCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | | || | ||| | || || || || || ||||| || || |
Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | |||| |||| |||||| || ||| | || | ||||||||||| |||
Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || ||||| || ||||| || || | ||| |||||| | ||||
Sbjct 144386 ATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACC 144327
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177
|| | ||| || ||||| |||||||| ||||| ||||| ||||||||||
Sbjct 144326 TCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278
>seq7231
Length=219762
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011
|||||||| | ||||| | ||| | |||| ||||| ||||||||||| || |||
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071
|| || | ||||||| |||||| || ||| |||| | | |||||||| || | |
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131
|| || ||||| ||||||| ||| || | | | || || ||||| |||
Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398
Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
| || || ||||||||||| | || |||||||| || ||||||
Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| || || || || ||||| ||||| | ||| ||| ||||||| |||||||| |||
Sbjct 92602 GTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACCC 92661
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | || ||||||||| || | ||||||||||| || || |||
Sbjct 92662 GCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTTCGCCTTC 92721
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| ||||| ||| || |||| |||||||||||| || || || ||
Sbjct 92722 ACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGTC 92781
Query 21159 TTGACAAATATTTGCAT 21175
|| || || ||||||||
Sbjct 92782 TTTACGAAGATTTGCAT 92798
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || |||| | || | ||||| || |||||||||||||| ||||| || |
Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || |||| ||||| || ||||| ||| | || || | ||||| ||| ||
Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || || || ||| ||| ||||| | | | ||||| | ||| || |
Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACT 93851
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||| || || || | ||| || ||||| || |||||
Sbjct 93852 TCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| ||||| || | || || | || | ||| ||||| || |||||||||||||| |
Sbjct 100206 TTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTG 100265
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| ||| || |||| || ||||| ||||| ||| | || | || ||||| || |
Sbjct 100266 ATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCG 100325
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||||||||||| |||||| || || | ||| ||||| | || ||
Sbjct 100326 GAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAA 100385
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || ||||| ||||| | |||||| || || || |||||
Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
||||| || || || |||||||||| ||| | ||| ||||| || ||||||||||||||
Sbjct 99977 TTTCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCA 100036
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| || || | | || || |||||||| || ||| |||| || ||||| || ||
Sbjct 100037 GATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGA 100096
Query 21066 GGCACGCCTTCCTTGTC 21082
|| | ||||| |||||
Sbjct 100097 GGGATTCCTTCTTTGTC 100113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422153968784768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |