Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19464 197 1e-45 seq7231 140 3e-28 seq19980 107 2e-18 >seq19464 Length=44290 Score = 197 bits (218), Expect = 1e-45 Identities = 382/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 116819 CAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAAC 116878 || || || || ||| |||||||||| || |||||||| |||||||| ||||| || Sbjct 12696 CAAGAAGTACAAGTGCCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAATGATGGAAAAT 12637 Query 116879 GTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGC---TCTTCGGAGGAG 116935 | || || ||||||||||| || | |||| ||| | | || |||| | Sbjct 12636 ATTCATTCAGAAATGTATTCTCTTCTGCTAAACACATACATCACCGAGTCCACGGA--AC 12579 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 | || | | || ||| || ||||| ||||| ||| | || ||||||| || ||| Sbjct 12578 GTGATC-GACTCTTCCGCGCAATTGAGACAATGCCATGCATTAAGAAGAAGGCTGATTGG 12520 Query 116996 GCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCG 117055 || | |||||||| | ||||| || | ||| ||||| | ||||| ||||| Sbjct 12519 GCCTTAGAGTGGATCGCTAACGAGGAGGCTGCGTACGGTGAGCGTGTTGTGGCATTCGCT 12460 Query 117056 GCCGTCGAGGGCGTCTTCTTTT-CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || ||||| ||| | || || |||| |||| ||||| || || ||||| || || || Sbjct 12459 GCAGTCGAAGGCATTTTTTTCAGCGGGGCGTTT-GCCGCTATTTTCTGGCTGAAAAAGCG 12401 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || ||||||| ||||| || |||||||| ||||||||||| | ||||| ||| |||| Sbjct 12400 AGGTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGACGAAGGTATGCA 12341 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGT 117234 ||||| |||||| || ||||||| || || | | ||| |||| ||||| | Sbjct 12340 CACAGACTTCGCCTGTCTGATGTTCAAACACCTGATCAACAAACCAAGCGAAGCGCGAAT 12281 Query 117235 CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294 | | ||| | | ||||| || |||||||| || || ||||| ||||| | || Sbjct 12280 CTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTCTCACTGAAGCATTACC 12221 Query 117295 GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354 || | || |||| | || ||||| |||| | |||||| |||||||| || || Sbjct 12220 TGTCGCTATGTTGGGTATGAACTGCGATCTGATGAAGAGATACATTGAGTTCGTTGCTGA 12161 Query 117355 CAGGCTGCTGCTCGAGCT 117372 | ||||| ||||||| Sbjct 12160 TCGTCTGCTCATCGAGCT 12143 Score = 129 bits (142), Expect = 6e-25 Identities = 171/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||| |||| || ||||||||| || || ||| |||| ||||| |||| | ||| Sbjct 13279 GAACCGTTGCTCCGGGAGAACCCCAATCGTTTTGTGCTTTTTCCCATTGAATATTCCGAC 13220 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||| |||| || || ||||||| |||||||| || || Sbjct 13219 ATTTGGCAAATGTACAAAAAGGCACAGGCCTCTTTTTGGACCGCTGAGGAGGTCGATTTG 13160 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | |||||| || || |||| | ||||| | |||||||| Sbjct 13159 GGCAAGGACATGTCTGACTGGAAGAACCGAATGAAACCTCAGGAGCGAGAATTCATCAAA 13100 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 ||| | || || ||||| || || || ||||| || ||||||||||| || ||| Sbjct 13099 CACATTCTTGCGTTTTTTGCTGCTTCTGATGGCATTGTGAACGAGAATCTTGTTGAG 13043 >seq7231 Length=219762 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| || |||||||||||| | || || ||| ||| | Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| |||||| | || |||||||||||||| |||| ||| Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || ||||| || ||||| |||| || |||||| || || || Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || |||||||| || ||||| Sbjct 93718 ATTCAAAAGGAGTCGACACTGCATCTCGTCTTGCG 93684 Score = 125 bits (138), Expect = 7e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || || || || || ||||| ||||| || ||||| | || ||||| |||| Sbjct 93443 AATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGA-GCCAT 93385 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | ||| |||| | ||| || | |||||||||||||| || | |||| Sbjct 93384 CCGACACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACC 93325 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | || | || || |||||| |||| || | |||||||| ||||| || | Sbjct 93324 AGCAACGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATA 93265 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 |||| |||||||| ||| || ||||| ||| | ||| || Sbjct 93264 ACATTCAGAAGGAAAGCACTCTCCATCTTGTGCTTCGCCTG 93224 Score = 122 bits (134), Expect = 9e-23 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || | ||||| || ||||| ||| | || |||||| || | Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||||||| ||||| || || ||||| | ||||| Sbjct 92738 GATACCATCGAGAACG-TGAAGGCGAAAATTCAGGACAAGGAAGGTATCCCGCCTGACCA 92680 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||| ||| | |||| ||||| |||||||| || |||| || ||| ||| |||||| Sbjct 92679 GCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCA--GACTAC 92622 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| || | ||||| || || || Sbjct 92621 AACATCCAGAAAGAATCAACGCTCCACCTCGT 92590 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || ||||| ||||| || || | || || || | | Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | || | ||||||| |||||||||||||| || | |||| Sbjct 92967 CGACACCATTGAGAACG-TAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACC 92909 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || ||||||| || || ||||| || || |||| ||||| || ||||||| Sbjct 92908 AACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACA 92849 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| ||| ||||||| ||| Sbjct 92848 ACATCCAGAAGGAAAGCACCTTGCATCTCGTG 92817 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || ||||| | || || ||| ||| | Sbjct 93670 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGC 93611 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| ||||| | ||||| ||||| || || | ||||| Sbjct 93610 GATACAATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 93552 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || ||||| || || || | ||||| |||| |||||||| Sbjct 93551 GCAACGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAA 93492 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || ||||| |||||| || Sbjct 93491 CATTCAAAAGGAAAGCACGCTTCA 93468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 ||||||||||||| || || ||||| | || || ||||| ||||| | ||||| || | Sbjct 94131 GAAAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGG 94072 Query 40745 CCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | |||| | | |||| ||||| ||| || | || ||||| || || || | Sbjct 94071 GATCGGACACGATCGAGAACG-TCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCA 94013 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || || || | ||| ||||| ||||| || |||| ||||| ||| ||| Sbjct 94012 GATCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGAT 93953 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || |||||||| | || || || || || | || ||| | || || Sbjct 93952 TACAATATACAGAAGGAATCGACTCTTCACCTCGTCCTCCGTTTGCGCGGAGG 93900 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||||||||| || || || || ||||| | || || ||| | | | Sbjct 100434 ATGCAGATCTTCGTAAAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGC 100375 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| ||| |||| ||||| || || || || | || || Sbjct 100374 GATACAATCGAAAACG-TTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCA 100316 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | | |||| || ||||| ||||| || |||| || || || ||||| || Sbjct 100315 GCAAAGGTTAATCTTTGCTGGCAAGCAGCTTGAAGACGGCCGAACGCTATCAGACTATAA 100256 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | || || || || || Sbjct 100255 CATTCAGAAAGAGTCTACTCTACACCTCGT 100226 >seq19980 Length=299602 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| || |||||||||||| | || || ||| | | Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||||||||| |||||| | || ||| Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || ||||| || || || | || || || |||||||| Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || ||||| || Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGT 144716 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||||| || || ||||| ||||| | || ||||| | | | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | ||| |||| ||| ||||| || || || ||| | || || Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAA-TTCAAGACAAGGAAGGAATTCCCCCCGATCA 145082 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | ||| ||||||||||| || || | ||||| ||| ||||||||| Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||| || || ||| | || || ||||| ||| || Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTG 145176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| || || ||||| | || || || || |||||| | || || || | Sbjct 144278 AAATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTT 144337 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || | | ||| |||||| || |||| || || ||||| || ||| | |||| Sbjct 144338 CTGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACC 144397 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || || |||||| |||| |||| || || || || |||| Sbjct 144398 AGCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACA 144457 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| || | || || ||||| || ||||| Sbjct 144458 ACATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCG 144494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515087509972480