Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7231 131 3e-25 seq19980 107 3e-18 >seq7231 Length=219762 Score = 131 bits (144), Expect = 3e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || |||||||||||||| || | ||| | ||| | | Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | || |||||||| || |||||||| || || |||||||| Sbjct 100147 TGATACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCA 100088 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| |||||||| || ||||| | || ||| |||| || || || ||||| Sbjct 100087 ACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAA 100028 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| ||||| || ||| | ||| |||| Sbjct 100027 CATTCAGAAAGAGTCTACTCTTCATCTGGT 99998 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| | || || ||||| ||||| | ||| |||| | Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || |||| |||||||| ||||| ||||| || || |||||||| Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCA 92265 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||| || || ||||||||| | |||||| | || || | ||||| || Sbjct 92264 GCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAA 92205 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| |||||||||||| |||| ||||| Sbjct 92204 TATTCAGAAAGAATCAACTCTGCACTTGGT 92175 Score = 107 bits (118), Expect = 3e-18 Identities = 172/246 (70%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || || || ||||| ||||| | || |||| ||| Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || ||||| |||||||||||| ||||| || || || ||||| || Sbjct 92967 CGACACCATTGAGAACGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACCA 92908 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||||||| | ||||| |||| || || || || || Sbjct 92907 ACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACAA 92848 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || ||| || |||||| | || | ||| | || || ||||| ||| || Sbjct 92847 CATCCAGAAGGAAAGCACCTTGCATCTCGTGCTCCGTCTCCGTGGCGGTATGCAAATCTT 92788 Query 124777 CATAAA 124782 | |||| Sbjct 92787 CGTAAA 92782 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| || || | || ||||| | | Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||||| || |||||||| || || || || ||||| Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || || ||| | || || | || || | |||||||||| Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || ||||| | || || || | || ||||| || Sbjct 93718 ATTCAAAAGGAGTCGACACTGCATCTCGTCTTGCGGCTTCGCGGTGGCAT 93669 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || || ||||| || | || |||| | | Sbjct 100662 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCT 100603 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||| ||||| ||||||||||| || || |||||| Sbjct 100602 GACACAATTGAGAATGTTAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCAGATCAA 100543 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || || |||| || | ||| || ||| Sbjct 100542 CAGAGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTACAAT 100483 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | ||| | ||| | || | || || ||||| Sbjct 100482 ATCCAAAAAGAGTCCACCCTCCATCTTGTTCTTCGACTTCGTGGAGGTAT 100433 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||| |||| || |||||||| ||| |||| | || | | Sbjct 94127 AATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGATC 94068 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || || | || ||| || || || |||||||||||||| ||||| |||| Sbjct 94067 GGACACGATCGAGAACGTCAAGACA-AAGATCCAGGATAAAGAAGGTATTCCACCAGATC 94009 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | || ||||| || || || || ||||||| |||| ||| | ||||| | Sbjct 94008 AGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTACA 93949 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || ||||| ||| | || | || | ||||| || || || || Sbjct 93948 ATATACAGAAGGAATCGACTCTTCACCTCGTCCTCCGTTTGCGCGGAGGGAT 93897 >seq19980 Length=299602 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | || | || ||| Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| || ||||| || || || |||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | ||||| ||||| ||||| | |||||| |||| || | || || || Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||||| || || | ||| |||| Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGT 145172 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || |||| || || ||||| || | ||| | || | Sbjct 144279 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTC 144338 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || ||| ||||||||||| || || || || || || || Sbjct 144339 TGATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACCA 144398 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || ||||| || || || | || || | ||||| || Sbjct 144399 GCAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACAA 144458 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | ||| | || || ||| | ||||||||||| Sbjct 144459 CATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGGTAT 144509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755262905446400