Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7231 152 4e-32 seq19980 145 7e-30 seq19464 98.7 9e-16 >seq7231 Length=219762 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | || || ||||| ||||| ||||||||| | Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||||||| |||||||||||| | || |||||||||||||| || || Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| || ||||||| || || | ||||| ||| |||| | ||| ||| Sbjct 92277 ATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACC 92336 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| ||||||| || || || ||||| ||||| Sbjct 92337 TCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | ||| | ||||| || | ||||||||||| |||||||| || || Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| ||||||||||| ||||| | || || | ||| ||||| ||||| Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || ||||| |||||| || || | ||| | ||| || || || ||| Sbjct 100100 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACC 100159 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | |||||||| || || || || || ||||||||||| Sbjct 100160 TCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || || |||||||| |||||| | | ||||| |||||| | |||||||||||| | Sbjct 93252 TCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAAA 93311 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || | ||| ||||| || ||||| |||||||| ||||| || ||| ||| || | | Sbjct 93312 ATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATTT 93371 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | ||||| | |||||| || | || | ||| |||||||| ||||| || ||| Sbjct 93372 TCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACA 93431 Query 118728 AAAATCTGCAT 118738 || |||||||| Sbjct 93432 AAGATCTGCAT 93442 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || || || |||||||| || | ||||| |||||||| ||||||||||| || Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||||||||| || || || || |||||||| |||||| |||||| ||| || | Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | |||||| | ||| || || | || | ||||| || || || ||||| ||| Sbjct 92956 TCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACA 93015 Query 118728 AAAATCTGCAT 118738 ||||||||||| Sbjct 93016 AAAATCTGCAT 93026 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || || |||||||||||||| || || | ||||| |||||| Sbjct 93461 CACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTC 93520 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||||||| ||| | |||||||| ||||| || ||||| || ||||||||||| Sbjct 93521 GAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 93580 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | ||| | || || || || ||||| | || | || || Sbjct 93581 GATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTT 93640 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 93641 CCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 ||||||||||| |||||||| || || | |||| | || || || ||||| || | Sbjct 100238 GTAGACTCTTTCTGAATGTTATAGTC--TGATAGCGTTCGGCCGTCTTCAAGCTGCTTGC 100295 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | | ||||||||||| || || || ||||||||| ||| ||| | Sbjct 100296 CAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCT 100355 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||||| || || | || ||||| | || | ||| || |||||||| | Sbjct 100356 TAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCG 100415 Query 118720 TTTTTACAAAAATCTGCAT 118738 ||||||| || |||||||| Sbjct 100416 TTTTTACGAAGATCTGCAT 100434 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | ||| | || | |||| || ||||||||||| || ||||| || Sbjct 100662 TACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCG 100721 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || | |||||||||||| |||| | | ||| || || || | Sbjct 100722 AAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGG 100781 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| ||| ||| || || | ||||| || || | || | Sbjct 100782 GAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCA 100841 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || ||||| || ||||| || ||||||||||| Sbjct 100842 CCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA---TCCTCGAG 118591 ||||| || || ||||| || |||||||| || | | |||| | || |||||||| Sbjct 92595 GTGGAGCGTTGATTCTTTCTGGATGTTGTAGTC--TGACAGTGTTC-TACCGTCCTCGAG 92651 Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 |||||| || || |||| | |||||||| || || || || || |||||||| ||| Sbjct 92652 CTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAAT 92711 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 ||| || || | |||| ||| || | | |||||||| | ||| | || || || Sbjct 92712 TTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCC 92771 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| ||||| || || ||||| Sbjct 92772 CGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| || | | || | ||| | || || || || || || ||||||||| Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| | || |||||||||||||| || || Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 118632 ATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || || || || | ||| | | ||||| || || | |||| ||||||| | ||| | Sbjct 94020 ATACCTTCTTTATCCTGGA--TCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTA 94077 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 94078 CGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCG 118568 ||||||| || | || || | |||| |||| || ||||||||||| || ||||| || Sbjct 100434 TACCTCCACGAAGTCG-AAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || || || || || ||||| || || |||| | | ||| ||||| ||| Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || || || |||||| ||||| |||||| | || | ||||| | | ||| Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | || || ||||| || ||||| || || |||||||| Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 >seq19980 Length=299602 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | ||||| ||||| || | ||||||||||||||||||||||| ||| Sbjct 145191 ACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGA 145132 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||||||| || ||| | || | | || |||||||| || Sbjct 145131 GAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGG 145072 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||||||| |||||| |||||| | || | || || | |||||| Sbjct 145071 AATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||| ||||| || ||||| |||||||||||||| Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || ||||||||||| | ||| || || || | |||||| ||| Sbjct 144476 GTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCA 144417 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || |||||||| ||| ||| || || Sbjct 144416 GCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTG 144357 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| || || | ||| ||||| | ||| | || || ||||| | |||| Sbjct 144356 ACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTT 144297 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 144296 TTCACAAAAATTTGCAT 144280 >seq19464 Length=44290 Score = 98.7 bits (108), Expect = 9e-16 Identities = 296/443 (67%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 44864 GTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT-CGGGGAGTTTTGCGGCGATATTTTA 44922 || |||||||| |||||||| | || || ||||| |||| || || || || | Sbjct 12471 GTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCGTTT-GCCGCTATTTTCTG 12413 Query 44923 CATGAAAAC-CAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAG 44981 |||||| | ||| | | ||||| || || || || ||||| || | || || | | Sbjct 12412 GCTGAAAAAGCGAGGTA-TCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTG 12354 Query 44982 ACGAAGGTCTGCACACCAACTTTGCCTGCCTC-TACTATAATACGAGAGTCGATCAAAAG 45040 |||||||| ||||||| |||| ||||| || | | || || || || | |||| Sbjct 12353 ACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCAAACACCTGA-TCAA-CAAACC 12296 Query 45041 TTG-GACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT 45099 | || |||| | || | | || | || || || |||||||| ||||| Sbjct 12295 AAGCGAAGCGCGAA---TCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATT 12239 Query 45100 TTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAAC-GCGAATATGATGAGAAAGT 45158 | | |||| || | || | | || |||| |||||| |||| | |||||| | | Sbjct 12238 TCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGA-TCTGATGAAGAGAT 12180 Query 45159 ACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATA 45218 |||||||||| || || |||||||| ||| || || | || | | ||| | | | Sbjct 12179 ACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTCAACTGCCAGAAGCTATGGAAGT 12120 Query 45219 CTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttG 45278 | ||| || ||||| |||||| | | ||||| | || |||||||| ||||| |||| Sbjct 12119 CCACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTG 12060 Query 45279 AGAAACGCGTCGGCGAATACAAG 45301 | |||||||| || |||||| || Sbjct 12059 AAAAACGCGTTGGTGAATACCAG 12037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433722285126016