Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 152 4e-32
seq19980 145 7e-30
seq19464 98.7 9e-16
>seq7231
Length=219762
Score = 152 bits (168), Expect = 4e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| || | | || ||||||||| | || || ||||| ||||| ||||||||| |
Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || ||||||||| |||||||||||| | || |||||||||||||| || ||
Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
||||| ||||| || ||||||| || || | ||||| ||| |||| | ||| |||
Sbjct 92277 ATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACC 92336
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | ||| | ||||| ||||||| || || || ||||| |||||
Sbjct 92337 TCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | ||| | ||||| || | ||||||||||| |||||||| || ||
Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||| ||||||||||| ||||| | || || | ||| ||||| |||||
Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| || || ||||| |||||| || || | ||| | ||| || || || |||
Sbjct 100100 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACC 100159
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || | |||||||| || || || || || |||||||||||
Sbjct 100160 TCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607
|| || |||||||| |||||| | | ||||| |||||| | |||||||||||| |
Sbjct 93252 TCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAAA 93311
Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667
|| | ||| ||||| || ||||| |||||||| ||||| || ||| ||| || | |
Sbjct 93312 ATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATTT 93371
Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727
|| | ||||| | |||||| || | || | ||| |||||||| ||||| || |||
Sbjct 93372 TCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACA 93431
Query 118728 AAAATCTGCAT 118738
|| ||||||||
Sbjct 93432 AAGATCTGCAT 93442
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607
|| || || |||||||| || | ||||| |||||||| ||||||||||| ||
Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895
Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667
||||||||||| || || || || |||||||| |||||| |||||| ||| || |
Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955
Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727
|| | |||||| | ||| || || | || | ||||| || || || ||||| |||
Sbjct 92956 TCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACA 93015
Query 118728 AAAATCTGCAT 118738
|||||||||||
Sbjct 93016 AAAATCTGCAT 93026
Score = 105 bits (116), Expect = 6e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || |||||||||||||| || || | ||||| ||||||
Sbjct 93461 CACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTC 93520
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||| |||||||| ||| | |||||||| ||||| || ||||| || |||||||||||
Sbjct 93521 GAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 93580
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| || || | ||| | || || || || ||||| | || | || ||
Sbjct 93581 GATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTT 93640
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || || |||||||||
Sbjct 93641 CCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671
Score = 102 bits (112), Expect = 7e-17
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599
||||||||||| |||||||| || || | |||| | || || || ||||| || |
Sbjct 100238 GTAGACTCTTTCTGAATGTTATAGTC--TGATAGCGTTCGGCCGTCTTCAAGCTGCTTGC 100295
Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659
|||| |||| | | ||||||||||| || || || ||||||||| ||| ||| |
Sbjct 100296 CAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCT 100355
Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719
|||| | ||||| || || | || ||||| | || | ||| || |||||||| |
Sbjct 100356 TAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCG 100415
Query 118720 TTTTTACAAAAATCTGCAT 118738
||||||| || ||||||||
Sbjct 100416 TTTTTACGAAGATCTGCAT 100434
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| | ||| | || | |||| || ||||||||||| || ||||| ||
Sbjct 100662 TACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCG 100721
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || || || | |||||||||||| |||| | | ||| || || || |
Sbjct 100722 AAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGG 100781
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || |||||||||||| ||| ||| || || | ||||| || || | || |
Sbjct 100782 GAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCA 100841
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | ||| | || || ||||| || ||||| || |||||||||||
Sbjct 100842 CCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA---TCCTCGAG 118591
||||| || || ||||| || |||||||| || | | |||| | || ||||||||
Sbjct 92595 GTGGAGCGTTGATTCTTTCTGGATGTTGTAGTC--TGACAGTGTTC-TACCGTCCTCGAG 92651
Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651
|||||| || || |||| | |||||||| || || || || || |||||||| |||
Sbjct 92652 CTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAAT 92711
Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711
||| || || | |||| ||| || | | |||||||| | ||| | || || ||
Sbjct 92712 TTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCC 92771
Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| ||| ||||| || || |||||
Sbjct 92772 CGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| || | | || | ||| | || || || || || || |||||||||
Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| ||||| ||||| || |||||| | || |||||||||||||| || ||
Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019
Query 118632 ATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
|| || || || | ||| | | ||||| || || | |||| ||||||| | ||| |
Sbjct 94020 ATACCTTCTTTATCCTGGA--TCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTA 94077
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | ||||| || || | ||||| ||||| || |||||
Sbjct 94078 CGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCG 118568
||||||| || | || || | |||| |||| || ||||||||||| || ||||| ||
Sbjct 100434 TACCTCCACGAAGTCG-AAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 100492
Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628
| || || || || || ||||| || || |||| | | ||| ||||| |||
Sbjct 100493 GAAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 100552
Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688
|| || || || |||||| ||||| |||||| | || | ||||| | | |||
Sbjct 100553 GGGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCA 100612
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | ||| | || || ||||| || ||||| || || ||||||||
Sbjct 100613 ACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
>seq19980
Length=299602
Score = 145 bits (160), Expect = 7e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
|||||| || | ||||| ||||| || | ||||||||||||||||||||||| |||
Sbjct 145191 ACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGA 145132
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||||| ||||||||||||||| || ||| | || | | || |||||||| ||
Sbjct 145131 GAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGG 145072
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||||||| |||||| |||||| | || | || || | ||||||
Sbjct 145071 AATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | |||||| ||||| || ||||| ||||||||||||||
Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || ||||| || ||||||||||| | ||| || || || | |||||| |||
Sbjct 144476 GTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCA 144417
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| | | |||||| || || || || |||||||| ||| ||| || ||
Sbjct 144416 GCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTG 144357
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||||| || || | ||| ||||| | ||| | || || ||||| | ||||
Sbjct 144356 ACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTT 144297
Query 118722 TTTACAAAAATCTGCAT 118738
|| |||||||| |||||
Sbjct 144296 TTCACAAAAATTTGCAT 144280
>seq19464
Length=44290
Score = 98.7 bits (108), Expect = 9e-16
Identities = 296/443 (67%), Gaps = 13/443 (3%)
Strand=Plus/Minus
Query 44864 GTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT-CGGGGAGTTTTGCGGCGATATTTTA 44922
|| |||||||| |||||||| | || || ||||| |||| || || || || |
Sbjct 12471 GTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCGTTT-GCCGCTATTTTCTG 12413
Query 44923 CATGAAAAC-CAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAG 44981
|||||| | ||| | | ||||| || || || || ||||| || | || || | |
Sbjct 12412 GCTGAAAAAGCGAGGTA-TCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTG 12354
Query 44982 ACGAAGGTCTGCACACCAACTTTGCCTGCCTC-TACTATAATACGAGAGTCGATCAAAAG 45040
|||||||| ||||||| |||| ||||| || | | || || || || | ||||
Sbjct 12353 ACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCAAACACCTGA-TCAA-CAAACC 12296
Query 45041 TTG-GACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT 45099
| || |||| | || | | || | || || || |||||||| |||||
Sbjct 12295 AAGCGAAGCGCGAA---TCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATT 12239
Query 45100 TTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAAC-GCGAATATGATGAGAAAGT 45158
| | |||| || | || | | || |||| |||||| |||| | |||||| | |
Sbjct 12238 TCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGA-TCTGATGAAGAGAT 12180
Query 45159 ACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATA 45218
|||||||||| || || |||||||| ||| || || | || | | ||| | | |
Sbjct 12179 ACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTCAACTGCCAGAAGCTATGGAAGT 12120
Query 45219 CTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttG 45278
| ||| || ||||| |||||| | | ||||| | || |||||||| ||||| ||||
Sbjct 12119 CCACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTG 12060
Query 45279 AGAAACGCGTCGGCGAATACAAG 45301
| |||||||| || |||||| ||
Sbjct 12059 AAAAACGCGTTGGTGAATACCAG 12037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433722285126016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |