Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 114 8e-21
seq7231 111 1e-19
>seq19980
Length=299602
Score = 114 bits (126), Expect = 8e-21
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || ||||||||||| || | ||| ||||| || ||||||||||||||
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| || | || || | ||| |||||||||||||| | || || || ||| |||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCGA 34340
| | |||||||| || ||| |||||| | || | |||| |||| | | ||||
Sbjct 145070 ATTCCTTCCTTGTCTTGAAT-TTTGGCTTTAACGTTC-TCAATCGTATCGCTTGGCTCGA 145013
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| |||||||| || || || ||| |||| |||||||| || || || ||
Sbjct 144471 TTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAA 144412
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| | || ||||||||| ||| | | |||||| || ||||| ||| | ||
Sbjct 144411 GATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATT 144352
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | || || || || | ||||| || || ||||| | |||||||||
Sbjct 144351 TTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCAC 144292
Query 34378 AAAGATCTGCAT 34389
||| || |||||
Sbjct 144291 AAAAATTTGCAT 144280
>seq7231
Length=219762
Score = 111 bits (122), Expect = 1e-19
Identities = 161/225 (72%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225
|| ||||| | ||||| || || | ||| ||||| ||||| ||||| || ||| ||
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285
||| | || |||||||| || || || ||||| | || |||||||| || | |
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 34286 CTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTC 34344
| ||| ||||| |||||| ||||| | || | || | |||| | ||||| ||
Sbjct 93339 CCCTCTTTGTCCTGGATCTTT-GCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397
Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||||| || |||||||||||||| || ||||||||||||||
Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | || || ||||||| |||| |||||||| ||||| ||||| ||
Sbjct 100207 TCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGA 100266
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
||| ||| |||| || | ||||||||| || || || | || ||||| ||| ||
Sbjct 100267 TAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGG 100326
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | |||||||| |||||| ||| | | | || | |||| | | ||| ||
Sbjct 100327 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || ||||| || ||||| || |||||||||||
Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | ||||| || || || || ||||| ||||| ||||||||||| ||
Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| || |||| || | || || || || || ||||| ||||| ||||| ||
Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||| ||||| || ||| || |||| | | || | ||| | | || ||
Sbjct 92920 ATGCCCTCTTTGTCTTGAAT-TTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAAC 92978
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 92979 TTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| |||| || || || || | || || || || || || || || ||
Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| |||| |||| |||||||| || || || || || ||||| || ||
Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||| || || || ||| ||| | || | || | |||| | | ||| ||
Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACT 93851
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394
|| | ||||||||||| || ||||| || |||||||||||||||||| |||
Sbjct 93852 TCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCATCCCTC 93903
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
|||||| || |||| ||||||| ||| | || ||||| || || |||||||||||
Sbjct 93443 TCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACT 93502
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || | || || | || || || ||||||||||| || |||||||| ||
Sbjct 93503 GAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGG 93562
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339
| | ||||||||| || ||||| ||| | | | || | |||| | | |||
Sbjct 93563 AATACCCTCCTTGTC--CTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCA 93620
Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || | ||||| || || || ||||| || || || |||||||||||
Sbjct 93621 ACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322991487226880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |