Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq19980 114 8e-21 seq7231 111 1e-19 >seq19980 Length=299602 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || ||||||||||| || | ||| ||||| || |||||||||||||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||| |||||||||||||| | || || || ||| ||| Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| |||||| | || | |||| |||| | | |||| Sbjct 145070 ATTCCTTCCTTGTCTTGAAT-TTTGGCTTTAACGTTC-TCAATCGTATCGCTTGGCTCGA 145013 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||| || || || ||| |||| |||||||| || || || || Sbjct 144471 TTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAA 144412 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || ||||||||| ||| | | |||||| || ||||| ||| | || Sbjct 144411 GATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATT 144352 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | || || || || | ||||| || || ||||| | ||||||||| Sbjct 144351 TTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCAC 144292 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 144291 AAAAATTTGCAT 144280 >seq7231 Length=219762 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 || ||||| | ||||| || || | ||| ||||| ||||| ||||| || ||| || Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285 ||| | || |||||||| || || || ||||| | || |||||||| || | | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 34286 CTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 | ||| ||||| |||||| ||||| | || | || | |||| | ||||| || Sbjct 93339 CCCTCTTTGTCCTGGATCTTT-GCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||||| || |||||||||||||| || |||||||||||||| Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||||| |||| |||||||| ||||| ||||| || Sbjct 100207 TCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGA 100266 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| || | ||||||||| || || || | || ||||| ||| || Sbjct 100267 TAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGG 100326 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| |||||| ||| | | | || | |||| | | ||| || Sbjct 100327 AATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| || ||||| || ||||||||||| Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| || || || || ||||| ||||| ||||||||||| || Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | || || || || || ||||| ||||| ||||| || Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| || |||| | | || | ||| | | || || Sbjct 92920 ATGCCCTCTTTGTCTTGAAT-TTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAAC 92978 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 92979 TTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| |||| || || || || | || || || || || || || || || Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| |||| |||||||| || || || || || ||||| || || Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| || || || ||| ||| | || | || | |||| | | ||| || Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACT 93851 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | ||||||||||| || ||||| || |||||||||||||||||| ||| Sbjct 93852 TCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCATCCCTC 93903 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || |||| ||||||| ||| | || ||||| || || ||||||||||| Sbjct 93443 TCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACT 93502 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || || | || || || ||||||||||| || |||||||| || Sbjct 93503 GAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGG 93562 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | ||||||||| || ||||| ||| | | | || | |||| | | ||| Sbjct 93563 AATACCCTCCTTGTC--CTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCA 93620 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || || || ||||| || || || ||||||||||| Sbjct 93621 ACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322991487226880