Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq17800 134 1e-26
>seq17800
Length=133550
Score = 134 bits (148), Expect = 1e-26
Identities = 345/523 (66%), Gaps = 2/523 (0%)
Strand=Plus/Minus
Query 20095 TTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG 20154
||||||| | | ||| ||| || || || | | ||||| || |||||||| ||
Sbjct 12666 TTATTATCTTGTTTTAGAGGCTCTACCAACGCCAAGGAGCTGTCGGAGAAAGGAGTAAAA 12607
Query 20155 ATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAA 20214
|||||| || | || ||| ||||||| ||||| ||| ||| | | | ||
Sbjct 12606 ATTTGGGATGCCAACGGTTCTCGTGAATTTTTGGACAGCCTTGGTTTTACCGCCAGGGAA 12547
Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274
|| || ||||| || || ||||| || || || ||| | ||||| || ||||| ||
Sbjct 12546 GAAGGCGATTTAGGCCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGTGCTGAGTACACA 12487
Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCA-ATTACAAAATGTTATTAATTT 20333
| ||| | | |||| || ||||| ||||| ||| | | | || |
Sbjct 12486 AATATGCATGCCGATTACACGAACCAGGGAGTTGATCAGATTGCTCAGA-TCATCAGCAC 12428
Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393
| | || | || ||||||||| || | |||||| ||| || ||||| | ||| |
Sbjct 12427 ACTAAAGAGCAATCCAAACGACCGACGTATTATTCTATCGGCATGGAATGTCTCGGATTT 12368
Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453
||| ||||| | || || ||||| || ||||||||||| || || |||
Sbjct 12367 GCCAAAGATGGCGCTTCCGCCCTGTCACTGTCTGGCTCAATTTTACGTCGCCAAAGGTGA 12308
Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513
| | || |||||| |||| || || ||| || ||||| || |||||||| ||||||||
Sbjct 12307 AGTCTCATGTCAACTGTACCAGCGCAGCGCCGACATGGGCCTCGGTGTTCCGTTCAATAT 12248
Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGA 20573
||| ||| || ||||||||| | || || || | | | || | || ||| ||| ||
Sbjct 12247 TGCCTCTTACGCTCTGCTTACGCACATCATCGCTCGTCTGACTGGATTGAAAGGGGGCGA 12188
Query 20574 CTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
||| || || || | ||| ||| | ||| |||| | ||||||
Sbjct 12187 CTTCGTGCATACGACAGGTGACACTCATGTTTATTTAAATCAT 12145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399084519355360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |