Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq17800 134 1e-26 >seq17800 Length=133550 Score = 134 bits (148), Expect = 1e-26 Identities = 345/523 (66%), Gaps = 2/523 (0%) Strand=Plus/Minus Query 20095 TTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG 20154 ||||||| | | ||| ||| || || || | | ||||| || |||||||| || Sbjct 12666 TTATTATCTTGTTTTAGAGGCTCTACCAACGCCAAGGAGCTGTCGGAGAAAGGAGTAAAA 12607 Query 20155 ATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAA 20214 |||||| || | || ||| ||||||| ||||| ||| ||| | | | || Sbjct 12606 ATTTGGGATGCCAACGGTTCTCGTGAATTTTTGGACAGCCTTGGTTTTACCGCCAGGGAA 12547 Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || || ||||| || || ||||| || || || ||| | ||||| || ||||| || Sbjct 12546 GAAGGCGATTTAGGCCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGTGCTGAGTACACA 12487 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCA-ATTACAAAATGTTATTAATTT 20333 | ||| | | |||| || ||||| ||||| ||| | | | || | Sbjct 12486 AATATGCATGCCGATTACACGAACCAGGGAGTTGATCAGATTGCTCAGA-TCATCAGCAC 12428 Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393 | | || | || ||||||||| || | |||||| ||| || ||||| | ||| | Sbjct 12427 ACTAAAGAGCAATCCAAACGACCGACGTATTATTCTATCGGCATGGAATGTCTCGGATTT 12368 Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453 ||| ||||| | || || ||||| || ||||||||||| || || ||| Sbjct 12367 GCCAAAGATGGCGCTTCCGCCCTGTCACTGTCTGGCTCAATTTTACGTCGCCAAAGGTGA 12308 Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513 | | || |||||| |||| || || ||| || ||||| || |||||||| |||||||| Sbjct 12307 AGTCTCATGTCAACTGTACCAGCGCAGCGCCGACATGGGCCTCGGTGTTCCGTTCAATAT 12248 Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGA 20573 ||| ||| || ||||||||| | || || || | | | || | || ||| ||| || Sbjct 12247 TGCCTCTTACGCTCTGCTTACGCACATCATCGCTCGTCTGACTGGATTGAAAGGGGGCGA 12188 Query 20574 CTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 ||| || || || | ||| ||| | ||| |||| | |||||| Sbjct 12187 CTTCGTGCATACGACAGGTGACACTCATGTTTATTTAAATCAT 12145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399084519355360