Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq19563 95.1 3e-14 >seq19563 Length=274849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| || ||||| || ||||||||||| || | || || ||| || |||||| Sbjct 231926 TGGAGCGCTCATATCTGCTTAAAATTGATGGAAAAGTGGTTGAGCGACCACAACACATGC 231867 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||||| || ||||| || |||||| |||||| || || ||| | || || || Sbjct 231866 TCATGCGTGTAGCTGTTGGTATTCACGGCACTGACATCGA-CGC-TGCCATAGAAACATA 231809 Query 248961 CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||||||||| ||| | || || |||| |||||| | ||||| ||||| || Sbjct 231808 TAATCTGATGAGTGAAAAGTGGTTCACGCACGCCAGCCCGACGTTGTTCAATGCCGGCAC 231749 Query 249021 CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGG 249080 | | |||||||| || |||||| | ||| ||||| |||| || ||| |||| || Sbjct 231748 CTGTAGGCCGCAGCTGAGTTCCTGCTTTTTGCTTACCATGAAAGATGATTCTATCGAAGG 231689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073485083940864