Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq19464 113 4e-20 >seq19464 Length=44290 Score = 113 bits (124), Expect = 4e-20 Identities = 469/734 (64%), Gaps = 12/734 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| | |||| | || || | || |||||||||| ||||| ||| ||| Sbjct 11978 TAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGCTTTC 12037 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||||| ||| | |||||||||||| || ||||| ||||| || || || | ||| Sbjct 12038 TGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCTCC 12097 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 ||||| || || ||||| || ||| | | | || | || || || | || | Sbjct 12098 ATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCAGA 12157 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| |||| ||||||||| ||| ||| | ||| || |||||||| | | Sbjct 12158 CGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACATAGCG 12217 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 ||||| | | | || | |||||||| ||| || | ||||| || || || || Sbjct 12218 ACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGAT---- 12273 Query 14156 GTAATAATTTC---ATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAA 14210 | ||| ||| || | | | | || | || ||||| || || | ||| || | Sbjct 12274 TTGATAGATTCGCGCTTCGCTTG-GTTTGTTGATCAGGTGTTTGAACATCAGACAGGCGA 12332 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 | || || | || || || | || || || || || || | || |||| Sbjct 12333 AGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCA 12392 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | | ||||| ||||| | ||| || || || || || | ||| || || || || | Sbjct 12393 TGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTT 12452 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 | |||||||| || || | | || || || ||| || | | ||| | ||||| | Sbjct 12453 CGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACT 12512 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | ||||| |||| || || ||||| | |||||| ||||| || || | Sbjct 12513 CTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAGTC 12572 Query 14451 GTTCCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509 | || || | | ||| | |||||||| | | || | ||||||||| || Sbjct 12573 GATCACGTTCCGT-GGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGAA 12631 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14569 || || |||||||| |||||||||||| || ||||| | || || | | |||||| Sbjct 12632 TGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTACT 12691 Query 14570 TCTGAGTAAAATCT 14583 ||| | |||| || Sbjct 12692 TCTTGGGAAAACCT 12705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482222312464640