Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq19464 113 4e-20
>seq19464
Length=44290
Score = 113 bits (124), Expect = 4e-20
Identities = 469/734 (64%), Gaps = 12/734 (2%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915
|||||||| | |||| | || || | || |||||||||| ||||| ||| |||
Sbjct 11978 TAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGCTTTC 12037
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
|| ||||||| ||| | |||||||||||| || ||||| ||||| || || || | |||
Sbjct 12038 TGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCTCC 12097
Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035
||||| || || ||||| || ||| | | | || | || || || | || |
Sbjct 12098 ATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCAGA 12157
Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095
| ||| |||| ||||||||| ||| ||| | ||| || |||||||| | |
Sbjct 12158 CGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACATAGCG 12217
Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155
||||| | | | || | |||||||| ||| || | ||||| || || || ||
Sbjct 12218 ACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGAT---- 12273
Query 14156 GTAATAATTTC---ATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAA 14210
| ||| ||| || | | | | || | || ||||| || || | ||| || |
Sbjct 12274 TTGATAGATTCGCGCTTCGCTTG-GTTTGTTGATCAGGTGTTTGAACATCAGACAGGCGA 12332
Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270
| || || | || || || | || || || || || || | || ||||
Sbjct 12333 AGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCA 12392
Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330
| | ||||| ||||| | ||| || || || || || | ||| || || || || |
Sbjct 12393 TGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTT 12452
Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390
| |||||||| || || | | || || || ||| || | | ||| | ||||| |
Sbjct 12453 CGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACT 12512
Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450
| ||||| |||| || || ||||| | |||||| ||||| || || |
Sbjct 12513 CTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAGTC 12572
Query 14451 GTTCCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509
| || || | | ||| | |||||||| | | || | ||||||||| ||
Sbjct 12573 GATCACGTTCCGT-GGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGAA 12631
Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14569
|| || |||||||| |||||||||||| || ||||| | || || | | ||||||
Sbjct 12632 TGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTACT 12691
Query 14570 TCTGAGTAAAATCT 14583
||| | |||| ||
Sbjct 12692 TCTTGGGAAAACCT 12705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482222312464640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |