Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 116 3e-21
seq7231 116 3e-21
>seq19980
Length=299602
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || ||||| || |||| ||||| || || ||||||||||||||||||||||
Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||| || | |||||||| || | || | ||||||||||| |||
Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||||| || ||||| | || || || | ||| || || | ||||||
Sbjct 145070 ATTCCTTCCTTGTCTTGAATTT-TGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| ||||| |||| ||||| | ||||| |||||||| |||||
Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || |||||||| || |||||||| || | | || | |||||||| |||
Sbjct 144482 TGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGT 144423
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| |||| | || || || || ||| | || |||||||| ||| |
Sbjct 144422 TTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTC 144363
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | | | | || ||| | ||| |||| |||||| | || |||||
Sbjct 144362 GCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTT 144303
Query 18303 AATGTTTTTACAAAAATTTGCATTT 18327
|| ||||| ||||||||||||||||
Sbjct 144302 AAAGTTTTCACAAAAATTTGCATTT 144278
>seq7231
Length=219762
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| ||| || ||||||||||| ||||| ||||| ||||
Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | ||| || | |||||| || || | ||||| | || ||||| |||
Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||||||||| ||||| | ||| || | | | | || || ||||||
Sbjct 92276 GATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|||| ||| ||| |||| |||||||| || || || ||||||||||||
Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/224 (68%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 18102 CCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATT 18161
|| || || | ||| || | ||| || ||||||||||| || ||||||||||| | || |
Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634
Query 18162 GTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACG 18221
||| ||| || || | ||||| |||||| |||| | || || || || || |
Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694
Query 18222 CCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCA 18281
|||||||| || ||||| ||| || | | | || || ||| ||| ||
Sbjct 92695 CCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCC 92754
Query 18282 ATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||| ||| | || || ||||| || ||||| || ||||||||
Sbjct 92755 AAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || ||||||||||| | || || || || |||||||| || |||||||| |
Sbjct 100664 CCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAA 100723
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| ||||| || ||| |||| | ||| ||||| || |||
Sbjct 100724 AGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGA 100783
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || ||||| || ||| | | |||||| | | | | || || | ||
Sbjct 100784 ATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACC 100843
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|||| |||||| | || ||||| | ||||| || ||||| ||||||
Sbjct 100844 TCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379249463681760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |