Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq7231 89.7 4e-13 >seq7231 Length=219762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || | |||||||| ||||| || | || ||||| | | Sbjct 93442 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATCC 93383 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| || | ||| || | ||||| ||| | || ||||||| Sbjct 93382 GACACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 93323 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| |||| ||| | || | |||||||| | | Sbjct 93322 CAACGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAAC 93263 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGG 25055 || ||||| || ||| || ||| | ||| | || |||| || Sbjct 93262 ATTCAGAAGGAAAGCACTCTCCATCTTGTGCTTCGCCTGCGAGG 93219 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || | || || ||||| || ||| | || || ||| | ||| Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| |||| |||||| | ||||| ||| | || || ||| Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 |||||| | || | ||| ||||| ||||||||||| Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGA 93744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418199754460160