Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq17800 131 3e-25 >seq17800 Length=133550 Score = 131 bits (144), Expect = 3e-25 Identities = 297/434 (68%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 35288 AGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGA-TACACATCTGGAACGCTAA 35346 || ||| ||| ||||||| || || | |||| | || || | || ||| | || || Sbjct 12651 AGAGGCTCTACCAACGCCAAGGAGCTGTCGGAGAA-AGGAGTAAAAATTTGGGATGCCAA 12593 Query 35347 TGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGG 35406 || || || |||||||||||||| || || || || | ||| || ||||| || Sbjct 12592 CGGTTCTCGTGAATTTTTGGACAGCCTTGGTTTTACCGCCAGGGAAGAAGGCGATTTAGG 12533 Query 35407 ACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTC-TTCCG 35465 ||||| ||||| ||||| ||||| ||||| |||||||| || | | | | | | ||| Sbjct 12532 CCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGTGCTGAGTA-CACAAATATGCATGCCG 12474 Query 35466 ATTATACTGGAA--AGGGTATTGATCAATTGGCCAATATACTAAAGACCCT-GAGAGAAA 35522 |||| || ||| |||| ||||||| | || | || | | || || |||| | Sbjct 12473 ATTACAC--GAACCAGGGAGTTGATCAGATTGCTCAGATCATCAGCACACTAAAGAG-CA 12417 Query 35523 ATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGG 35582 ||||| | || || | || ||| | ||||||||||| |||| | | |||| Sbjct 12416 ATCCAAACGACCGACGTATTATTCTATCGGCATGGAATGTCTCGGATTTGCCAAAGATGG 12357 Query 35583 CTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGC 35641 | ||||| || || ||| || || ||||||||||| || || || || ||| | || || Sbjct 12356 CGCTTCCGCCCTGTCAC-TGTCTGGCTCAATTTTACGTCGCCAAAGGTGAAGTCTCATGT 12298 Query 35642 CAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 || |||| ||||| |||| || | || | || || || ||||||||||| || ||| Sbjct 12297 CAACTGTACCAGCGCAGCGCCGACATGGGCCTCGGTGTTCCGTTCAATATTGCCTCTTAC 12238 Query 35702 TCTCTTCTGACTCA 35715 |||| || || || Sbjct 12237 GCTCTGCTTACGCA 12224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989324738887840