Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 390 1e-103
>seq19563
Length=274849
Score = 390 bits (432), Expect = 1e-103
Identities = 989/1491 (66%), Gaps = 30/1491 (2%)
Strand=Plus/Plus
Query 62036 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62092
|||||| | ||||| ||||| | |||| ||| || |||||||| || ||||||||
Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950
Query 62093 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62152
||| || || ||||| || |||| || || || ||||| |||| ||| |||| |
Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010
Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212
| || |||| ||||| ||| | |||||||| ||||||||||||||||| | || ||
Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070
Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62272
|||||| || ||||| | || |||| || ||||| | || || | |||||
Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130
Query 62273 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTC-TTG- 62330
| || ||||| || |||| | || ||| || | | || |||| |||
Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCA----TTATAAGCAACCAATTCGTTGC 230186
Query 62331 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTA 62388
||| |||||||| | | | || |||| | || |||| ||||| | || || |
Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246
Query 62389 CTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62448
|||| || || || || || |||| || | ||| || || ||||| ||||| | |
Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306
Query 62449 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62508
| ||||| || || | ||| || || || |||||||| ||||||||||||| | | |
Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366
Query 62509 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568
|||| | | ||| ||| | || ||| ||||||| |||| | |||||||
Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426
Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACC----GTTACTGGCGTACGATCCT 62624
|| || |||||| | ||||| | ||| |||| || |||
Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483
Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684
| || || ||||| | |||||| || || | | ||| || || || || || |||
Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542
Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744
|| || || || |||||||| || || || || |||||| || || ||||| ||
Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602
Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804
|| || | || || | ||| || | ||||| || ||||| || || |||| |||
Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662
Query 62805 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863
| ||||| | || || |||||||||| ||||| || |||| ||| ||||| || ||
Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721
Query 62864 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922
||| |||| || | | ||||| || || || ||||| ||| ||||| || |
Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780
Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982
| | ||||| || | ||| | || || || || || || || | |||| || |
Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840
Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042
| ||| | ||||| || || || | |||| |||||||| ||||| | |||||| |
Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900
Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102
|||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| |
Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960
Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT 63161
|| ||| | ||| || | ||| | | || | || | || || | | |
Sbjct 230961 GACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCC 231019
Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221
|| | ||| ||| | || | | ||||||||| | ||||||| | | || |
Sbjct 231020 TCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCC 231079
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
||||||| || | |||||||| ||||||| || | |||| ||||| ||||||
Sbjct 231080 GGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAAC 231139
Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|| ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || ||
Sbjct 231140 AGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGT 231198
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
|||||| | ||||||||| | | ||||| | |||||| |||||||| || || ||
Sbjct 231199 ATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGC 231258
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | || |||| || || |||||||| || | |||| || |||||||| || ||
Sbjct 231259 AAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACAC 231318
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511
| | |||||| | ||| || || ||| | || || || || | |||||
Sbjct 231319 ACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629656618621440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |