Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19563 390 1e-103 >seq19563 Length=274849 Score = 390 bits (432), Expect = 1e-103 Identities = 989/1491 (66%), Gaps = 30/1491 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62092 |||||| | ||||| ||||| | |||| ||| || |||||||| || |||||||| Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950 Query 62093 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62152 ||| || || ||||| || |||| || || || ||||| |||| ||| |||| | Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010 Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212 | || |||| ||||| ||| | |||||||| ||||||||||||||||| | || || Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070 Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62272 |||||| || ||||| | || |||| || ||||| | || || | ||||| Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130 Query 62273 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTC-TTG- 62330 | || ||||| || |||| | || ||| || | | || |||| ||| Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCA----TTATAAGCAACCAATTCGTTGC 230186 Query 62331 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTA 62388 ||| |||||||| | | | || |||| | || |||| ||||| | || || | Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246 Query 62389 CTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62448 |||| || || || || || |||| || | ||| || || ||||| ||||| | | Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306 Query 62449 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62508 | ||||| || || | ||| || || || |||||||| ||||||||||||| | | | Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366 Query 62509 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 |||| | | ||| ||| | || ||| ||||||| |||| | ||||||| Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACC----GTTACTGGCGTACGATCCT 62624 || || |||||| | ||||| | ||| |||| || ||| Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 | || || ||||| | |||||| || || | | ||| || || || || || ||| Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || || || || |||||||| || || || || |||||| || || ||||| || Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 || || | || || | ||| || | ||||| || ||||| || || |||| ||| Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662 Query 62805 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | ||||| | || || |||||||||| ||||| || |||| ||| ||||| || || Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721 Query 62864 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 ||| |||| || | | ||||| || || || ||||| ||| ||||| || | Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780 Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | | ||||| || | ||| | || || || || || || || | |||| || | Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 | ||| | ||||| || || || | |||| |||||||| ||||| | |||||| | Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 |||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| | Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT 63161 || ||| | ||| || | ||| | | || | || | || || | | | Sbjct 230961 GACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCC 231019 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 || | ||| ||| | || | | ||||||||| | ||||||| | | || | Sbjct 231020 TCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCC 231079 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||||| || | |||||||| ||||||| || | |||| ||||| |||||| Sbjct 231080 GGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAAC 231139 Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || || Sbjct 231140 AGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGT 231198 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| | ||||||||| | | ||||| | |||||| |||||||| || || || Sbjct 231199 ATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGC 231258 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || |||| || || |||||||| || | |||| || |||||||| || || Sbjct 231259 AAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACAC 231318 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 | | |||||| | ||| || || ||| | || || || || | ||||| Sbjct 231319 ACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629656618621440