Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 141 9e-29
>seq19563
Length=274849
Score = 141 bits (156), Expect = 9e-29
Identities = 740/1163 (64%), Gaps = 20/1163 (2%)
Strand=Plus/Plus
Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168
|||| ||| | | ||| || |||| || || ||||| || || ||||| |||| | ||
Sbjct 230217 TTAGATCTTTAAGTAGATGATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTG 230276
Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228
|| ||||| ||||||||||| ||||| ||||| || | | || || | || |
Sbjct 230277 AGTACGCGTTGCTCGTATATGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCG 230336
Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288
||||||| ||||| ||||| | ||| |||||||| | || |||| | || ||| |
Sbjct 230337 ATGCAGTGGGCATAGGTGCCAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAG 230396
Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTA 37348
|||||| | ||| ||||| | | | || | ||||||||||||||| |
Sbjct 230397 CTTTTAGCGCGGCCCAGTCCCAAAGAGAACTGGGAGTGACGCCCCACATATCATATTGCA 230456
Query 37349 GAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTA 37408
||||||||| | || ||| | | || || ||||| | || | | || || |
Sbjct 230457 ATATACCTTTAGATACAGGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAA 230516
Query 37409 GTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATA 37468
|| || || | ||| | ||| | || || || || || || ||| || | || | |
Sbjct 230517 TATCACAGCTTGCTTCCAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTT 230576
Query 37469 TTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528
||||||| || || || | | | ||||| || || || || | || |
Sbjct 230577 CCATTGCTTCGGGACTGTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTT 230636
Query 37529 GAACACCGATACCTATGGGTCTATG---TTTCTTATTA-GATCTAGACGATTCTATCACT 37584
| || || || || || |||| ||| ||| || || | ||| | |||| |||
Sbjct 230637 GGACTCCAATTCCAATCGGTCGATGACGTTTATTGCTATGCTCT----GCTTCTGGAACT 230692
Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644
||||| || || | ||| || || || || || ||| | | ||| |||| |
Sbjct 230693 GGATAGTAGTTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCT 230752
Query 37645 CTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCT 37704
| | || | || ||| | | ||| ||||| | | | | | || |
Sbjct 230753 TTGAGTTTTCCAAAGTCAAACTTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCA 230812
Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATT 37763
|| || || || || | |||||| | | || | | || || || ||||| | |||
Sbjct 230813 AGGTTGCAAACTGCGATTTCATCAG-GAGAGGAATACTCGATTATTTCCGTACATAAATT 230871
Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823
| | | |||||||| | ||| |||||| |||| ||||||| |||||||||
Sbjct 230872 AGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATA 230931
Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883
|| || || || || ||| ||| |||||| |||| ||| | | ||| || ||||
Sbjct 230932 TAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCA-AAGTTTCT 230990
Query 37884 TG-CTT-TAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTA 37941
| ||| || | ||| | || || ||| |||| || | ||| |
Sbjct 230991 GGGCTTCTACCTGGCGCATGAAGCGGCC-CTCGCGTTCATATTGCTCGTAGAGTTTTTCG 231049
Query 37942 AAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGA-CACATTAGAGACC 37999
|| || || ||||| ||| |||| | || ||||||| | |||| ||||| | |||||
Sbjct 231050 AACTCCTTTCCCCA-ACAGTCGCTCAGCCCCGGACATT-GATTGGAGCACATCAAAGACC 231107
Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATA 38059
| | ||| || || || || |||||| | ||||||||||| || || || | |
Sbjct 231108 ACTGGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCA-AAGGCCATAGAAA 231166
Query 38060 A-ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAAT 38118
| ||| | ||| | |||||| | || |||||| | || || || || ||
Sbjct 231167 AGATCACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAG 231226
Query 38119 ATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCC 38178
||||| || ||||||||||| | ||| |||| | || || || || |||| |||||||
Sbjct 231227 ATATCGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCC 231286
Query 38179 TGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGAT 38238
|| | || ||||| |||||||||| || | | | ||| || || || ||||| |||
Sbjct 231287 TGGTCAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATGCCATTCGAT 231346
Query 38239 TTGCCGTTTATACCGGATATATA 38261
| ||||| | || | ||||||
Sbjct 231347 GTTCCGTTAGTGCCTGCTATATA 231369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468405045061120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |