Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19563 141 9e-29 >seq19563 Length=274849 Score = 141 bits (156), Expect = 9e-29 Identities = 740/1163 (64%), Gaps = 20/1163 (2%) Strand=Plus/Plus Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 |||| ||| | | ||| || |||| || || ||||| || || ||||| |||| | || Sbjct 230217 TTAGATCTTTAAGTAGATGATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTG 230276 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || ||||| ||||||||||| ||||| ||||| || | | || || | || | Sbjct 230277 AGTACGCGTTGCTCGTATATGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCG 230336 Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288 ||||||| ||||| ||||| | ||| |||||||| | || |||| | || ||| | Sbjct 230337 ATGCAGTGGGCATAGGTGCCAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAG 230396 Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTA 37348 |||||| | ||| ||||| | | | || | ||||||||||||||| | Sbjct 230397 CTTTTAGCGCGGCCCAGTCCCAAAGAGAACTGGGAGTGACGCCCCACATATCATATTGCA 230456 Query 37349 GAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTA 37408 ||||||||| | || ||| | | || || ||||| | || | | || || | Sbjct 230457 ATATACCTTTAGATACAGGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAA 230516 Query 37409 GTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATA 37468 || || || | ||| | ||| | || || || || || || ||| || | || | | Sbjct 230517 TATCACAGCTTGCTTCCAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTT 230576 Query 37469 TTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528 ||||||| || || || | | | ||||| || || || || | || | Sbjct 230577 CCATTGCTTCGGGACTGTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTT 230636 Query 37529 GAACACCGATACCTATGGGTCTATG---TTTCTTATTA-GATCTAGACGATTCTATCACT 37584 | || || || || || |||| ||| ||| || || | ||| | |||| ||| Sbjct 230637 GGACTCCAATTCCAATCGGTCGATGACGTTTATTGCTATGCTCT----GCTTCTGGAACT 230692 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 ||||| || || | ||| || || || || || ||| | | ||| |||| | Sbjct 230693 GGATAGTAGTTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCT 230752 Query 37645 CTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCT 37704 | | || | || ||| | | ||| ||||| | | | | | || | Sbjct 230753 TTGAGTTTTCCAAAGTCAAACTTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCA 230812 Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATT 37763 || || || || || | |||||| | | || | | || || || ||||| | ||| Sbjct 230813 AGGTTGCAAACTGCGATTTCATCAG-GAGAGGAATACTCGATTATTTCCGTACATAAATT 230871 Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823 | | | |||||||| | ||| |||||| |||| ||||||| ||||||||| Sbjct 230872 AGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATA 230931 Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883 || || || || || ||| ||| |||||| |||| ||| | | ||| || |||| Sbjct 230932 TAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCA-AAGTTTCT 230990 Query 37884 TG-CTT-TAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTA 37941 | ||| || | ||| | || || ||| |||| || | ||| | Sbjct 230991 GGGCTTCTACCTGGCGCATGAAGCGGCC-CTCGCGTTCATATTGCTCGTAGAGTTTTTCG 231049 Query 37942 AAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGA-CACATTAGAGACC 37999 || || || ||||| ||| |||| | || ||||||| | |||| ||||| | ||||| Sbjct 231050 AACTCCTTTCCCCA-ACAGTCGCTCAGCCCCGGACATT-GATTGGAGCACATCAAAGACC 231107 Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATA 38059 | | ||| || || || || |||||| | ||||||||||| || || || | | Sbjct 231108 ACTGGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCA-AAGGCCATAGAAA 231166 Query 38060 A-ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAAT 38118 | ||| | ||| | |||||| | || |||||| | || || || || || Sbjct 231167 AGATCACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAG 231226 Query 38119 ATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCC 38178 ||||| || ||||||||||| | ||| |||| | || || || || |||| ||||||| Sbjct 231227 ATATCGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCC 231286 Query 38179 TGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGAT 38238 || | || ||||| |||||||||| || | | | ||| || || || ||||| ||| Sbjct 231287 TGGTCAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATGCCATTCGAT 231346 Query 38239 TTGCCGTTTATACCGGATATATA 38261 | ||||| | || | |||||| Sbjct 231347 GTTCCGTTAGTGCCTGCTATATA 231369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468405045061120