Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq19563 398 1e-105 seq19464 165 1e-35 >seq19563 Length=274849 Score = 398 bits (440), Expect = 1e-105 Identities = 992/1492 (66%), Gaps = 32/1492 (2%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 64885 |||||| | ||||| ||||| | |||| ||| || |||||||| || |||||||| Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950 Query 64886 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 64945 ||| || || ||||| || |||| || || || ||||| |||| ||| |||| | Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 | || |||| ||||| ||| | |||||||| ||||||||||||||||| | || || Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065 |||||| || ||||| | || ||||| || ||||| | || || | ||||| Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130 Query 65066 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC-TTG- 65123 | || ||||| || |||| | || ||| || || | || |||| ||| Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGC----AACCAATTCGTTGC 230186 Query 65124 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 65181 ||| |||||||| | | | || |||| | || |||| ||||| |||| || | Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246 Query 65182 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 65241 ||||||| || || || || |||| || | ||| || || ||||| ||||| | | Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306 Query 65242 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 65301 | ||||| || || | ||| || || || |||||||| ||||||||||||| | | | Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366 Query 65302 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 |||| | | ||| ||| | || ||| ||||||| | |||| | ||||||| Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426 Query 65362 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCT 65417 || || ||| | ||||| | ||| |||| || ||| Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483 Query 65418 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477 | || || || || | |||||| || || | ||||| || || || || || ||| Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542 Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537 || || || || || ||||| || || || || |||||| | || ||||| || Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 || || | || || | ||| || | ||||| || ||||| || || |||| ||| Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662 Query 65598 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 65656 | ||||| | || || |||||||||| ||||| || |||| ||| ||||| || || Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721 Query 65657 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCTCA 65714 ||| |||| || | | ||||| || || || ||||| ||| ||||| | || | Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGC-CT 230779 Query 65715 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 || | ||||| || | ||| | || || || || ||||| || | |||| || | Sbjct 230780 TCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGA 230839 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | ||| | ||||| || || || | |||| |||||||| ||||| | |||||| Sbjct 230840 GAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGC 230899 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 ||||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| Sbjct 230900 TGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATT 230959 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT 65953 ||| ||| | ||| || | ||| | | || | || | || || | | Sbjct 230960 TGACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCC 231018 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 || | ||| ||| | || | | ||||||||| | ||||||| | | || || Sbjct 231019 CTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCC 231078 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||||||| || | |||||||| ||||||| || | |||| ||||| |||||| Sbjct 231079 CGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAA 231138 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 || ||||| | |||||| || ||| || | ||| | | ||| ||||| || | || | Sbjct 231139 CAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAG 231197 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 ||||||| | ||||||||| | | ||||| |||||| |||||||| || || | Sbjct 231198 TATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCG 231257 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | | || |||| || || |||||||| || | |||| || |||||||| || | Sbjct 231258 CAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACA 231317 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 | | | |||||| | ||| ||||| ||||| || || || || | ||||| Sbjct 231318 CACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 165 bits (182), Expect = 1e-35 Identities = 472/720 (66%), Gaps = 8/720 (1%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 35867 |||||||||| | ||||| | || | ||| |||| || |||||| ||| || Sbjct 11976 TTTAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGCTT 12035 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | ||||||||||| || |||||||| || ||||| ||||| ||||| | || || | | Sbjct 12036 TCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCT 12095 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || ||||| ||||| | || | | || | | | || | || Sbjct 12096 CCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCA 12155 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 | ||| || || || || || ||| | ||||||| || || ||||| || | | Sbjct 12156 GACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACATAG 12215 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA- 36106 || || | || |||| |||||||||||||| || | || ||||| | || || Sbjct 12216 CGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGATTT 12275 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 |||| | | |||| || ||| | | | ||||| ||||||| ||| ||||| Sbjct 12276 GATAG-ATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGAACATCAGACAGGCGAAG 12334 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || ||| | ||| ||||| | || | || ||| || ||||| || ||||| Sbjct 12335 TCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCATG 12394 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 | || |||||||| ||||| || || | ||||| | || || ||||| ||||| Sbjct 12395 ATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTTCG 12454 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CT-GTCATGTATCCACTTT 36343 ||||| || || || | || | ||| || || | || || || | ||||||| | Sbjct 12455 ACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACTCT 12514 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 |||||||| |||||||| || | || ||||||||||| || || ||||| Sbjct 12515 AAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAGTCGA 12574 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | ||| | || | | ||||| | | || |||| ||||||||| |||||| Sbjct 12575 TCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGAATGA 12634 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || ||||| ||||||||||| | ||||||| | ||||||||| Sbjct 12635 ATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTACTTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658004571032320