Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17800 98.7 8e-16 >seq17800 Length=133550 Score = 98.7 bits (108), Expect = 8e-16 Identities = 324/502 (65%), Gaps = 10/502 (2%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 ||||| || | |||||| || ||||| ||||| ||| ||| || || | || Sbjct 12155 TAAACATGAGTGTCACCTGTCGTATGCACGAAGTCGCCCCCTTTCAATCCAGTCAGACGA 12214 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 ||||| | | ||| || || ||||| ||| || || ||||| || |||||||||||| Sbjct 12215 GCGATGATGTGCGTAAGCAGAGCGTAAGAGGCAATATTGAACGGAACACCGAGGCCCATG 12274 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACAC 21125 |||||| | ||||||||| || || || | || || || |||||||| ||| | Sbjct 12275 TCGGCGCTGCGCTGGTACAGTTGACATGAGACTTCACCTTTGGCGACGTAAAATTGAGCC 12334 Query 21126 AAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATA 21185 | | |||||| || || || |||||| | | |||| | ||||| || | | | Sbjct 12335 AGACAGTGACAGGGCGGAAGCGCCATCTTTGGCAAATCCGAGACATTCCATGCCGATAGA 12394 Query 21186 ACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCC 21245 | || || || |||| || || || | | | | | | | ||| || Sbjct 12395 ATAATACGTCGGTCGTTTGGATTGCTCTTTAGTGTGCTGATGATCTGAGCAATCTGATCA 12454 Query 21246 ACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCAC 21305 || ||||| | ||| | ||| | ||||||| || || ||||| | |||| Sbjct 12455 ACTCCCTGGTTCGTGTAATCGGCATGCATATTTGTGTACTCAGCACCGAAATGGCGCCAC 12514 Query 21306 TGGAACCCGTACACCGGCCCCAGATCGCCCT----CGCGGCGGTCCCCGAAGCCCTGCGC 21361 ||||| |||||||| || || | |||||| | | |||||| || || || Sbjct 12515 TGGAAGCCGTACACGGGGCCTAAATCGCCTTCTTCCCTGGCGGT-----AAAACCAAGGC 12569 Query 21362 CG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTT 21420 | ||||||| | || || |||| || |||||||||||||| || |||||| | Sbjct 12570 TGTCCAAAAATTCACGAGAACCGTTGGCATCCCAAATTTTTACTCCTTTCTCCGACAGCT 12629 Query 21421 CGGTGGAGTCGGTGGAGCCCCT 21442 | ||| || ||| ||||| || Sbjct 12630 CCTTGGCGTTGGTAGAGCCTCT 12651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427669393943040