Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7231 140 3e-28 seq19980 109 5e-19 seq19464 105 7e-18 >seq7231 Length=219762 Score = 140 bits (154), Expect = 3e-28 Identities = 174/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||| | ||||||||||| ||||||||||| || | Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTC--TG 100265 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| |||||| ||||| || |||||| |||| | | |||||||||||| | Sbjct 100266 ATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCG 100325 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCC 139714 | || ||||| ||||| ||| | |||| ||| | | ||| | ||| ||| | || || Sbjct 100326 GAATACCTTCCTTGTC-TTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCA 100384 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || | |||||| ||||||| |||||||||||| || |||||| || Sbjct 100385 ACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCATACCT 100438 Score = 125 bits (138), Expect = 7e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608 |||| || ||||| | || || ||||| ||||| || |||||| || || | || | Sbjct 92169 CGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCA 92228 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || ||||| ||||| ||||| | || ||||| |||||||| || || |||||||| || Sbjct 92229 -TCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTT 92287 Query 139669 GTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||| |||||| |||| | ||| | || || | |||||| ||||||| ||| | Sbjct 92288 ATCC-TGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTA 92346 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||||||||| || ||||| |||||||| Sbjct 92347 TGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 || || ||||||||||||||| | | |||| || || | |||||| |||||| | Sbjct 93252 TCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAAA 93311 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 |||| ||||||||| || ||||| ||||| |||||||| ||| ||| ||| | | | Sbjct 93312 ATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATTT 93371 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | |||||||| ||||| || |||| || | |||||||||||| | || || || Sbjct 93372 TCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACA 93431 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 93432 AAGATCTGCAT 93442 Score = 116 bits (128), Expect = 4e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 139541 CCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATT 139600 ||||| | ||| | ||| | ||| | ||| || ||||| || ||||| || || || | Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634 Query 139601 GTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 139660 || || ||| |||||||||||||| ||| |||||| || ||||| || || || || Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694 Query 139661 CCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTC 139719 ||||| ||||| ||| |||| | || | | || | || || | ||| || ||||| Sbjct 92695 CCTTCCTTGTC-CTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTC 92753 Query 139720 AACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||| | ||||| || ||||| || |||||||| ||||||||| Sbjct 92754 CAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCATA 92799 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | || | || ||||| |||||||| |||||||| Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| || || || |||||| ||||||||||||||||||| ||||| Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||||||| || | | ||| | ||| ||| |||| || || Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||| || || || || ||||| Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 104 bits (114), Expect = 2e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTAC 139625 || ||||||||||| || || || || | | | | ||| |||||| || ||||||| Sbjct 100466 GTGGACTCTTTTTGGATATTGTAGTC--TGAAAGGGTACGACCGTCTTCAAGTTGTTTAC 100523 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| |||||| | || ||||| ||||| || ||||||||||| |||||| || Sbjct 100524 CGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTTCGCTT 100583 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || | |||||| | |||||| || || | ||| | ||||| ||||| | | Sbjct 100584 TAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCCGGTAAGGG 100643 Query 139746 TTTTTACGAATATTTGCATAGCT 139768 |||| ||||| || |||||| || Sbjct 100644 TTTTCACGAAGATCTGCATACCT 100666 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || ||||||| ||| || ||||||||||| || || || Sbjct 93444 CCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTG 93503 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||| ||||| || || | || ||||||||||| || ||||| Sbjct 93504 AGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGA 93563 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| |||||| || | | ||| | ||| ||| |||| || ||| Sbjct 93564 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACC 93623 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | || || ||||| || ||||| Sbjct 93624 TCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCT 139619 |||| ||||||||||| ||||||||||| || || | | ||| |||||||||| Sbjct 100004 TGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG--ATAGAGTACGACCATCTTCGAGCT 100061 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 ||||||||||| | || || | || ||||| ||||| || ||||||||||| ||| || Sbjct 100062 GTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTC-CTGAATT 100120 Query 139680 TTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || | || | | ||| | || || ||| || ||||| | || | || ||||| Sbjct 100121 TTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCT 100180 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| || ||||| || ||||| Sbjct 100181 GTGAGCGTCTTCACGAAAATCTGCAT 100206 >seq19980 Length=299602 Score = 109 bits (120), Expect = 5e-19 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||||||||||| || ||| | |||| || ||||||||| Sbjct 145166 TGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGT 145107 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || | |||| | ||| |||||||| || || ||||| ||||| ||| |||| Sbjct 145106 TTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC-TTGAATTTT 145048 Query 139682 TGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | |||| | |||| || | || ||| | ||||| || |||| || | ||| || |||| Sbjct 145047 GGCTTTAAC-GTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCGTTTTTCCGG 144989 Query 139740 TCAACGTTTTTACGAATATTTGCATA 139765 | | |||||| || || || |||||| Sbjct 144988 TAAGCGTTTTAACAAAAATCTGCATA 144963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || | |||| || || ||||| || ||||| ||||| Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||||||||||||| |||| | | ||||| || || || Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | ||| | ||| || | | |||||| Sbjct 144386 ATCCCCTCCTTATCT-TGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCAC 144328 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| || ||||| || || |||||||| Sbjct 144327 CTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 >seq19464 Length=44290 Score = 105 bits (116), Expect = 7e-18 Identities = 336/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| ||||||||| || | ||||||| ||||| | || | | | || ||| Sbjct 12534 AAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCTGCGTACGGTGAGCGT 12475 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGttttttt-CGGGTAGTTTTGCGGCAATATT 52682 | || || || ||| ||| ||||| | ||||| |||| |||| || || || || Sbjct 12474 GTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCGTTT-GCCGCTATTTT 12416 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | |||| || || ||||| |||||||| || ||||| ||| | || || || Sbjct 12415 CTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACG 12356 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAA 52802 |||||||| ||||||||||| || || ||| || || | | || | | | || ||| Sbjct 12355 TGACGAAGGTATGCACACAGACTTCGCCTGTCTG-ATGTTCAAACACCTGATCAACAAAC 12297 Query 52803 ATTGTCATATGAAAAAATTCTA-GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGT 52861 | | | || |||| | || |||| || || || | ||| ||| |||| | Sbjct 12296 CAAGCGAAGCGCGAA---TCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAAT 12240 Query 52862 TTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACCATGATG-TGCGA 52919 || | || || || ||||| || | ||||||| |||||| |||| | ||||| | || Sbjct 12239 TTCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGATC-TGATGAAGAGA 12181 Query 52920 GTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTAT-- 52977 ||||| ||||| ||||| || | ||| | || ||||| | ||| | | |||| Sbjct 12180 -TACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTC-AACTGCC-AGAAGCTATGG 12124 Query 52978 -AATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTT 53036 | | | || || || || |||||| | | || || ||||| |||||||| || || Sbjct 12123 AAGTCCACG-AATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTT 12065 Query 53037 TTTCGAGAGACGTGTGGGCGAGTAC 53061 || || | ||| || || || ||| Sbjct 12064 CTTTGAAAAACGCGTTGGTGAATAC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495937206041600