Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq19563 448 7e-121 seq19464 167 3e-36 >seq19563 Length=274849 Score = 448 bits (496), Expect = 7e-121 Identities = 1005/1498 (67%), Gaps = 20/1498 (1%) Strand=Plus/Plus Query 78696 CTTTATCTTATCCTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACG 78752 ||| ||||| |||||| | ||||| ||||| | |||| ||| || |||||||| Sbjct 229882 CTTGATCTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACG 229938 Query 78753 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAG 78812 || ||||||||||| || || ||||| || |||| || ||||| ||||| |||| Sbjct 229939 CAGGTAGTACATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAA 229998 Query 78813 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 78872 ||| |||| | | || |||| ||||| ||| | |||||||| |||||||||||||| Sbjct 229999 CTTGCCATAATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGC 230058 Query 78873 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 78932 ||| | || |||||||| || ||||| | || ||||| || ||||| | || || Sbjct 230059 TCCACGATCAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTA 230118 Query 78933 AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT 78992 | ||||| | || ||||| || |||| | || ||| || || | Sbjct 230119 GAGCAACTTAAGGTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAA---- 230174 Query 78993 CCTATTC-TTG---ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGAT 79048 || |||| ||| ||| |||||||| | | | || |||| | || |||| |||| Sbjct 230175 CCAATTCGTTGCGCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGAT 230234 Query 79049 GCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTAT 79108 | |||| || |||||||| || || || || |||| || | ||| || || |||| Sbjct 230235 GATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTAT 230294 Query 79109 ATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTG 79168 ||||||| | |||||||| || || | ||| || || || ||||| || |||||||||| Sbjct 230295 ATGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTG 230354 Query 79169 CCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAAT 79228 ||| | | ||||| | | ||| ||| || ||| ||||||| | |||| | Sbjct 230355 CCAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGT 230414 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGT 79288 |||||||| | || || ||| | ||||||||| | ||||| ||| | Sbjct 230415 CCCAAAGAGAACTGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAG 230474 Query 79289 ATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA 79348 || || ||| |||||||| | |||||| | || | ||||| || || || | Sbjct 230475 GCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCA 230534 Query 79349 ATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTAT 79408 | || ||||| || || || || || || || || || || |||||| | || | Sbjct 230535 AAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGT 230594 Query 79409 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 79468 |||| || || || | || || | ||| || | ||||| || ||||| || || | Sbjct 230595 CAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCG 230654 Query 79469 GTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 79528 ||| ||| | ||||| | || |||||||||| ||||| || |||| ||| |||| Sbjct 230655 GTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAA 230714 Query 79529 TTTTATTGA-GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT 79587 | || |||| | ||| || | | ||||| || || || ||||| ||| ||||| Sbjct 230715 TCTTGTTGAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAAC 230773 Query 79588 CGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCA 79647 || || | ||||| || | |||| || || || || ||||| || | ||| Sbjct 230774 TTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCA 230833 Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | || | | ||| | |||||||| || || | ||| ||||| || ||||| | | Sbjct 230834 TCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGA 230893 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 ||||| ||||| ||||||| |||||| ||||| ||||| | ||| | || || || ||| Sbjct 230894 TTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTT 230953 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTA 79826 ||||| ||| ||| | ||| || | ||| | | || | || | || | || | Sbjct 230954 TCAATTTGACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAA 231012 Query 79827 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | || | ||| ||||| || | | ||||||||| | ||||||| ||| Sbjct 231013 GCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCT 231072 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | || ||||||| | | |||||||| ||||||| |||| |||| ||||| Sbjct 231073 CAGCCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACG 231132 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 80005 |||||| || ||||| | |||||| || ||| || ||||| | | ||| || || || Sbjct 231133 CATAAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAA 231191 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 | || |||||||| | ||||||||| | | ||||| | |||||| |||||||| | Sbjct 231192 TACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAAT 231251 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 | || || | | | ||||| | || || |||||||| || | |||| || ||||||| Sbjct 231252 AGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTAT 231311 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 | || || | | |||||| | ||| ||||| ||||| || || || || | ||||| Sbjct 231312 TGTACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 167 bits (184), Expect = 3e-36 Identities = 474/724 (65%), Gaps = 16/724 (2%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAA---TGATTATCTTCTTGAGACATAACTCCCATTT 49669 ||||||| || | ||||| | || || | ||||| | || |||||| ||| || Sbjct 11976 TTTAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGCTT 12035 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | ||||||||||| || |||||||| || ||||| ||||| ||||| | || || | | Sbjct 12036 TCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCT 12095 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || || |||||||| || || | | || | | | || | || Sbjct 12096 CCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCA 12155 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 | ||| || || || || || ||| | ||||||| || || ||||| || | | Sbjct 12156 GACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACATAG 12215 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC-----TGTTAT 49904 || || | || |||| |||||||||||||| |||| || || || || | | Sbjct 12216 CGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGATTT 12275 Query 49905 AATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 |||||| | || |||| || ||| | | | ||||| ||||||| ||| || Sbjct 12276 GATAGAT-TCGCG----CTTCGCTTGGTTTGTTGATCAGGTGTTTGAACATCAGACAGGC 12330 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||| || ||||| ||| ||||| | || || || ||| || ||||| || || Sbjct 12331 GAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGG 12390 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084 ||| | || |||||||| ||||| || || | ||||| | ||| || || || || Sbjct 12391 CATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCC 12450 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-ACTGGCGC--TGTCATGTATCCA 50141 ||| ||||| || || || |||| | ||| || || | | | | || | ||||| Sbjct 12451 TTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCA 12510 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || | |||||||| |||||||| || | || ||||| || || || || ||||| Sbjct 12511 CTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAG 12570 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | ||| | || | | || || | | || |||| ||||||||| || Sbjct 12571 TCGATCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGA 12630 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||| ||||| || |||||||| ||||||||||| | ||||||| | || || Sbjct 12631 ATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTAC 12690 Query 50322 TTCT 50325 |||| Sbjct 12691 TTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718085210494720