Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19464 122 8e-23 >seq19464 Length=44290 Score = 122 bits (134), Expect = 8e-23 Identities = 465/723 (64%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| | |||| || || || | || |||||||||| ||||| ||| ||| Sbjct 11978 TAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGCTTTC 12037 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||||| ||| | |||||||||||| || ||||| ||||| || || || | ||| Sbjct 12038 TGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCTCC 12097 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| || || ||||| | ||| | | | || | || || || | || | Sbjct 12098 ATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCAGA 12157 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||||| |||||||| ||| ||| | ||| || |||||||| | | Sbjct 12158 CGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACATAGCG 12217 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | | || | |||||||| ||| || | ||||| || || || || || Sbjct 12218 ACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGAT--TT 12275 Query 13824 GTAATAATCTC-ATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 13880 | | | || | || | | | | || | || ||||| || || | ||| || || Sbjct 12276 GATAGATTCGCGCTTCGCTTG-GTTTGTTGATCAGGTGTTTGAACATCAGACAGGCGAAG 12334 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 || || | || || || | || || || || || || | || ||||| Sbjct 12335 TCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCATG 12394 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | ||||| ||||| | ||| || || || ||||| | |||| || || || || || Sbjct 12395 ATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTTCG 12454 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 |||||||| || || | | || || || ||| || | | ||| | ||||| | | Sbjct 12455 ACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACTCT 12514 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 ||||| |||| || || ||||| | |||||| ||||| || || | Sbjct 12515 AAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGC----GCGGAAGAG 12570 Query 14121 TCCTTCTCTTT---AGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 || || | || | ||| | |||||||| | | || | ||||||||| || Sbjct 12571 TCGATCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGA 12630 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 || || |||||||| |||||||||||| || || || | || || | | |||||| Sbjct 12631 ATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTAC 12690 Query 14237 TTC 14239 ||| Sbjct 12691 TTC 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479605381523200