Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7231 107 1e-18 seq19980 100 2e-16 >seq7231 Length=219762 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||||||| | ||| || |||| || | || ||||| || ||| Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||| ||||| | || | ||||||||| || |||| ||||| | Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTC 94055 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| |||| ||||||| || |||||||| || |||| ||||||||| Sbjct 94056 TCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACA 94115 Query 43099 AAAATTTGCATTTT 43112 || ||||||||||| Sbjct 94116 AAGATTTGCATTTT 94129 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 42886 CCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAAT 42945 || ||||| | | ||| | ||||| |||||| ||||| || | || |||||| | Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 42946 GTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACA 43005 || || | || ||||| ||||| || ||||||||||| || || || || | || | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 43006 CCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCT 43065 || ||||| || |||| ||||||| | ||| ||||||| | |||||| || Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398 Query 43066 ACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | ||| || || || ||||| ||||| || ||||| || |||||| Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||| | ||||| ||||| || | ||||| || || Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||| || ||||| || | |||||||| || | ||| Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | |||| || | ||| ||||||| | ||| || Sbjct 92920 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACT 92979 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| |||||||| || || |||||||||||||| |||||| Sbjct 92980 TCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027 >seq19980 Length=299602 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42877 TCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAA 42936 || || ||||| || ||||| | ||||| ||| | || ||| ||||| | ||||| Sbjct 145196 TCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAG 145137 Query 42937 TCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCG 42996 ||||| | || || | || || | |||||||| || |||||||| | ||||||||| Sbjct 145136 TCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCG 145077 Query 42997 GCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCC 43056 | || | ||||| || || || |||| || | ||| || |||| | | Sbjct 145076 GGGGGAATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGC 145017 Query 43057 TCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 145016 TCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| || | |||||| |||| ||||| ||||| || ||||| || || | ||| Sbjct 144458 TTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGC 144399 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | || || || || ||| | | ||||| | | | ||| || Sbjct 144398 TGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCA 144339 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || ||| || || | || ||||| |||||||||| |||||||||||||||||||||| Sbjct 144338 GAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATT 144279 Query 43111 T 43111 | Sbjct 144278 T 144278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | || | |||| ||| ||||||||| | |||||| || || Sbjct 144962 CCGCCACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAA 144903 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | || || |||||||| ||||||| ||||||||||| || Sbjct 144902 AGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGA 144843 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | ||| ||| || || ||| || Sbjct 144842 ATTCCTTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACT 144783 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| || ||||||||||| Sbjct 144782 TCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381274558881984