Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19563 360 3e-94 seq19464 165 1e-35 >seq19563 Length=274849 Score = 360 bits (398), Expect = 3e-94 Identities = 977/1487 (66%), Gaps = 22/1487 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||| | || |||||||| | | ||| | |||||||| || |||||||| || Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCC 229953 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 || || ||||| || |||| || || || ||||| |||| ||| ||| | | Sbjct 229954 GGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGT 230013 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || |||| || | ||| | || ||||| ||||||||||||||||| | || ||||| Sbjct 230014 TTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGC 230073 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 71030 ||| || ||||| | || ||||| || ||||| | || || | ||||| | Sbjct 230074 CATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAGGTT 230133 Query 71031 TTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTT-TTG---A 71086 || ||||| || |||| | || ||| || |||| || ||| ||| | Sbjct 230134 TTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAA----CCAATTCGTTGCGCA 230189 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 || |||||||| | | | || |||| | || |||| |||||| |||| || |||| Sbjct 230190 TCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTT 230249 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 |||| || || || || |||| ||| | ||| || || ||||| ||||| | || | Sbjct 230250 GAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATT 230309 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| || || | ||| || || || |||||||| ||||||||||||| | || |||| Sbjct 230310 CATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGCTAT 230369 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA-- 71324 | | | ||||| | || ||| ||||||| | |||| | ||||||| || Sbjct 230370 TGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGA---GAAC 230426 Query 71325 TGGTA-CAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 ||| | || || || ||| | || || | | Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAACCCTCGT 230486 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || || || | ||||| | || | ||||| || || || || || || || | Sbjct 230487 AAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCGTAGT 230546 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | || || || || || || || || || |||||| || || ||||| || || Sbjct 230547 AGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGTAAAC 230606 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 || | || || | ||| || | ||||| || ||||| || || |||| || | | Sbjct 230607 GCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGACGTT 230666 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 |||| | || |||||||||| ||||| || |||| ||| ||||| || ||||| | Sbjct 230667 TATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTTGAGGT 230726 Query 71624 TTC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 ||| || | | ||||| || || || ||||| ||| ||||| | || || | Sbjct 230727 TTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTTCATTG 230785 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||| || | || | || || || || ||||| || | |||| || | || | Sbjct 230786 ACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAGAGGAA 230845 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || ||||| || || | |||| |||||||| ||||| | |||||| ||||| Sbjct 230846 TACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCTGATTG 230905 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||||| |||||| ||||| ||||| | || | || || || |||||||| ||| | Sbjct 230906 CTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTTGACTT 230965 Query 71863 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 || | ||| || | ||| | | || | || | || | || | | || | Sbjct 230966 TCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCG 231024 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGGAC 71980 ||| ||||| || | | ||||||||| | ||||||| || | || | || |||| Sbjct 231025 TTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAA-CAGTCGCTCAGCCCCGGAC 231083 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 ||| ||| | |||||||| ||||||| |||| || | ||||| |||||| || | Sbjct 231084 ATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAACAGGT 231143 Query 72041 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 |||| | |||||| || ||| || ||||| | | ||| || || || | || |||||| Sbjct 231144 CAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGTATTC 231202 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || | ||||||||| | | ||||| | |||||| |||||||| || || || | | Sbjct 231203 TTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGCAAAA 231262 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | ||||||| || || |||||||| || | |||| || |||||||| || || | Sbjct 231263 GCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACACACGA 231322 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 | |||||| | ||| ||||| |||| || || || || | ||||| Sbjct 231323 AGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 165 bits (182), Expect = 1e-35 Identities = 451/688 (66%), Gaps = 11/688 (2%) Strand=Plus/Plus Query 41750 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 41809 |||| | || |||||| ||| ||| ||||||||||| || |||||||| || ||||| Sbjct 12011 TCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTC 12070 Query 41810 GTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtt 41869 || || ||||| | || || | ||||| || || |||||||| || || | | Sbjct 12071 GTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGC 12130 Query 41870 tttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATC 41929 || | | | || | || | ||| || | ||| || || ||| | |||||| Sbjct 12131 TTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATC 12190 Query 41930 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 41989 | || || ||||| || | | || || | || |||| |||||||||||||| Sbjct 12191 AGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCG 12250 Query 41990 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC----TTCACTCGGTGGATACAA 42045 || | || ||||| | || ||| | | | ||| ||| || ||| | | Sbjct 12251 ATGGCAACAGCGTCCTTAAT----GATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGAT 12306 Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 | ||||| ||||||| ||| ||||| || ||||| ||| || || | || | Sbjct 12307 CAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAG 12366 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 || ||| || ||||| || ||||| | || |||||||| ||||| || |||| || Sbjct 12367 CTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGC 12426 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| | || || || || ||||| ||||| || || || | || | ||| || || Sbjct 12427 AAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTA 12486 Query 42226 ACCGGCA--CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | || || || | ||||||| | |||||||| |||||||| || | || || Sbjct 12487 CGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGG 12546 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||| || || || || ||||| | ||| | || | | ||||| | Sbjct 12547 CATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGTT 12606 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 | || |||| |||||||||||||||||| ||||| || |||||||| |||||||| Sbjct 12607 TAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAA 12666 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||| | ||||||| || ||||||||| Sbjct 12667 ACAACGCGCCTCGGGCACTTGTACTTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670967656820480