Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7231 122 9e-23 >seq7231 Length=219762 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || ||||| || | |||| || || || | || |||||||| || || ||||||||| Sbjct 92154 TGTCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCG 92213 Query 143015 CTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 || || | || | || ||||||||||| ||||| | || ||||| |||||||| || Sbjct 92214 GACAGGGTACGTCCA-TCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGG 92272 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || |||||||| || || ||||||| |||| | ||| | || |||| ||| || Sbjct 92273 GGGGATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTC 92332 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| || | || || |||||||| || || ||||| |||||||| Sbjct 92333 AACCTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 109 bits (120), Expect = 6e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || | || | ||||| ||||| || ||||| || || | Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTC--TG 100265 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| |||||| || || || |||||| |||| | | |||||||||||| | Sbjct 100266 ATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCG 100325 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||| ||| || | | ||| | || || | ||||| | Sbjct 100326 GAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAA 100385 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 | || | ||| | |||||| ||||||| ||||||||||| || |||||| || Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCATACCT 100438 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||| | ||| || || ||||| || || ||||| Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| ||||| || |||||| ||||||||||||||||||| ||||| Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| ||||| || |||||| || | | ||| | || || ||||||| || Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | || || || || | || || || || || ||||| Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 100 bits (110), Expect = 3e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | ||| | || || |||||||| || ||||| || | Sbjct 100436 CCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTC--TG 100493 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| |||||| ||||||||||| ||| |||||| | || ||||| |||| Sbjct 100494 AAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 100553 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| ||||| ||| | | || | ||||| | ||| || | Sbjct 100554 GGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAA 100613 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| | || | ||||| ||||| | ||||| ||||| || |||||| || Sbjct 100614 CTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCATACCT 100666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||| || || ||||| |||||| | | |||| || || | ||||| |||||| | Sbjct 93251 TTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAA 93310 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 |||| ||||||||| || ||||| ||||| |||||||| || ||| ||| | | Sbjct 93311 AATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATT 93370 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 ||| | ||||| | || || ||||||| || | |||||||||||| | || || || Sbjct 93371 TTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGAC 93430 Query 143173 GAATATTTGCAT 143184 || || ||||| Sbjct 93431 AAAGATCTGCAT 93442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||| || || |||||||| || | |||| ||| ||||||||||| |||||| | Sbjct 92835 TTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAA 92894 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 ||| ||||| || || || || || ||||| |||||||| |||||| ||||| | Sbjct 92895 GATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTT 92954 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 || | ||||| | || || ||||||| || | || || || || | ||||| || Sbjct 92955 CTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCAC 93014 Query 143173 GAATATTTGCAT 143184 || || ||||| Sbjct 93015 AAAAATCTGCAT 93026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||| ||||| |||||||| || || | ||||| || ||||||||||| || || | Sbjct 93479 TTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAA 93538 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 || ||||||||||| || ||||| || || || ||||| ||||| || | | Sbjct 93539 AATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTT 93598 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 ||| | || || ||||||| || |||| || | ||||| || || | || || || Sbjct 93599 TTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGAC 93658 Query 143173 GAATATTTGCAT 143184 ||| || ||||| Sbjct 93659 GAAGATCTGCAT 93670 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGT 143038 ||||| ||||| ||||| || ||||| || || || | | ||| |||||||| Sbjct 100003 ATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG--ATAGAGTACGACCATCTTCGAGC 100060 Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 |||||||||||| | || || | || ||||| ||||| || ||||||||||| |||| Sbjct 100061 TGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATT 100120 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 || || | | ||| | || || ||| |||||| || | || | || ||||| Sbjct 100121 TTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCT 100180 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | || || ||||| || ||||| Sbjct 100181 GTGAGCGTCTTCACGAAAATCTGCAT 100206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506884807119360