Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 122 9e-23
>seq7231
Length=219762
Score = 122 bits (134), Expect = 9e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|| ||||| || | |||| || || || | || |||||||| || || |||||||||
Sbjct 92154 TGTCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCG 92213
Query 143015 CTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073
|| || | || | || ||||||||||| ||||| | || ||||| |||||||| ||
Sbjct 92214 GACAGGGTACGTCCA-TCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGG 92272
Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133
|| |||||||| || || ||||||| |||| | ||| | || |||| ||| ||
Sbjct 92273 GGGGATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTC 92332
Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| |||| || | || || |||||||| || || ||||| ||||||||
Sbjct 92333 AACCTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Score = 109 bits (120), Expect = 6e-19
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | ||| | || | || | ||||| ||||| || ||||| || || |
Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTC--TG 100265
Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
|| | | ||| |||||| || || || |||||| |||| | | |||||||||||| |
Sbjct 100266 ATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCG 100325
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || ||||| ||||| ||| ||| || | | ||| | || || | ||||| |
Sbjct 100326 GAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAA 100385
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
| || | ||| | |||||| ||||||| ||||||||||| || |||||| ||
Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCATACCT 100438
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||||| || | ||| | ||| || || ||||| || || |||||
Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | |||||| ||||| || |||||| ||||||||||||||||||| |||||
Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||| ||||| || |||||| || | | ||| | || || ||||||| ||
Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||| || | || || || || | || || || || || |||||
Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 100 bits (110), Expect = 3e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | || | ||| | ||| | || || |||||||| || ||||| || |
Sbjct 100436 CCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTC--TG 100493
Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| | | ||| |||||| ||||||||||| ||| |||||| | || ||||| ||||
Sbjct 100494 AAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 100553
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || ||||||||||| ||||| ||| | | || | ||||| | ||| || |
Sbjct 100554 GGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAA 100613
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|||| | || | ||||| ||||| | ||||| ||||| || |||||| ||
Sbjct 100614 CTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCATACCT 100666
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052
||| || || ||||| |||||| | | |||| || || | ||||| |||||| |
Sbjct 93251 TTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAA 93310
Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112
|||| ||||||||| || ||||| ||||| |||||||| || ||| ||| | |
Sbjct 93311 AATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATT 93370
Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172
||| | ||||| | || || ||||||| || | |||||||||||| | || || ||
Sbjct 93371 TTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGAC 93430
Query 143173 GAATATTTGCAT 143184
|| || |||||
Sbjct 93431 AAAGATCTGCAT 93442
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052
||| || || |||||||| || | |||| ||| ||||||||||| |||||| |
Sbjct 92835 TTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAA 92894
Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112
||| ||||| || || || || || ||||| |||||||| |||||| ||||| |
Sbjct 92895 GATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTT 92954
Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172
|| | ||||| | || || ||||||| || | || || || || | ||||| ||
Sbjct 92955 CTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCAC 93014
Query 143173 GAATATTTGCAT 143184
|| || |||||
Sbjct 93015 AAAAATCTGCAT 93026
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052
||| ||||| |||||||| || || | ||||| || ||||||||||| || || |
Sbjct 93479 TTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAA 93538
Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112
|| ||||||||||| || ||||| || || || ||||| ||||| || | |
Sbjct 93539 AATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTT 93598
Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172
||| | || || ||||||| || |||| || | ||||| || || | || || ||
Sbjct 93599 TTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGAC 93658
Query 143173 GAATATTTGCAT 143184
||| || |||||
Sbjct 93659 GAAGATCTGCAT 93670
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGT 143038
||||| ||||| ||||| || ||||| || || || | | ||| ||||||||
Sbjct 100003 ATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG--ATAGAGTACGACCATCTTCGAGC 100060
Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098
|||||||||||| | || || | || ||||| ||||| || ||||||||||| ||||
Sbjct 100061 TGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATT 100120
Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158
|| || | | ||| | || || ||| |||||| || | || | || |||||
Sbjct 100121 TTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCT 100180
Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184
|| | || || ||||| || |||||
Sbjct 100181 GTGAGCGTCTTCACGAAAATCTGCAT 100206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506884807119360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |