Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17800 168 1e-36 seq19563 120 5e-22 seq19464 120 5e-22 >seq17800 Length=133550 Score = 168 bits (186), Expect = 1e-36 Identities = 348/507 (69%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 69962 GGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGGCAACAG 70020 || || ||||| ||||| |||||| | || || || ||| | |||||| | |||| | Sbjct 12648 GGCTCTACCAACGCCAAGGAGCTGT-CGGAGAAAGGAGTAAAAATTTGGGATGCCAACGG 12590 Query 70021 TAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCC 70080 | ||| ||||||| || || || |||| ||| |||| |||||| | || || Sbjct 12589 TTCTCGTGAATTTTTGGACAGCCTTGGTTTTACCGCCAGGGAAGAAGGCGATTTAGGCCC 12530 Query 70081 AGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGAGACAGACT 70139 |||||||| ||||||||| | || | || | |||| | | ||| | | || | Sbjct 12529 CGTGTACGGCTTCCAGTGGCGCCATTTCGGTGCTGAGTACACAAATATGCATGCC-GATT 12471 Query 70140 ATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCTCAAGACCAATCCA 70198 | || ||||| |||||||| ||||| | | |||| ||| || |||| ||||||| Sbjct 12470 ACACGAACCAGGGAGTTGATCAGATTGCTCAGA-TCATCAGCACACTAAAGAGCAATCCA 12412 Query 70199 ACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTA 70258 | || | | || | | | |||||||| | ||||||| | ||||| || Sbjct 12411 AACGACCGACGTATTATTCTATCGGCATGGAATGTCTCGGATTTGCCAAAGATGGCGCTT 12352 Query 70259 CCACCGTGTCACTGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTCATGCTTAAT 70317 || || ||||||||| ||||||| |||||| ||| | | || || | ||||| | | Sbjct 12351 CCGCCCTGTCACTGTCTGGCTCAATTTTACGTCGC-CAAAGGTGAAGTCTCATGTCAACT 12293 Query 70318 GTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTAT 70377 ||| ||| | || |||||||||||||||||||| || || || ||||| || || | Sbjct 12292 GTACCAGCGCAGCGCCGACATGGGCCTCGGTGTTCCGTTCAATATTGCCTCTTACGCTCT 12233 Query 70378 GTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCAT 70437 | | |||||||| || |||| | || || |||||| | ||| ||||| || || | Sbjct 12232 GCTTACGCACATCATCGCTCGTCTGACTGGATTGAAAGGGGGCGACTTCGTGCATACGAC 12173 Query 70438 TGGCGACGCTCACGTGTATTTAAATCA 70464 || ||| |||| || ||||||||||| Sbjct 12172 AGGTGACACTCATGTTTATTTAAATCA 12146 >seq19563 Length=274849 Score = 120 bits (132), Expect = 5e-22 Identities = 348/527 (66%), Gaps = 8/527 (2%) Strand=Plus/Minus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 |||| | ||||||||||| | |||||||| | | ||||| ||| ||||| || Sbjct 231340 TGGCATTGTGCCAATGCTTCGTGTGTACAATAACACAGCGCGATATGTTGACCAGGGAGG 231281 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||||| |||| || ||| | || |||| |||||||| ||||| || || | ||||| Sbjct 231280 TAATAAGAGGCCGGGTGCTTTTGCGATCTATTTGGAACCATGGCATGCCGATATCTTTGA 231221 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTT 97002 || |||| ||||||| || |||| ||||||| ||| |||| | || | || | Sbjct 231220 ATTCCTCGATTTGCGCAAGAATACTGGTATTGAAGA-ACACAGAGCTCGTGATCTTTTCT 231162 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCC 97062 ||| || ||||| || || |||| ||| || ||| | || |||| | ||| Sbjct 231161 ATGGCCTTTGGGTACCTGACCTGTTTATGCGTCGAGTCGAGGAAAATGGCCAGTGGTCTT 231102 Query 97063 TAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCA 97122 | |||||| || | | || || ||| ||| || ||||| | ||||| || | Sbjct 231101 TGATGTGCTCCAATCAATGTCCGGGGCTGAGCGACTGTTGGGGAAAGGAGTTCGA--AAA 231044 Query 97123 AGTACACG-GC-CTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACT 97180 | | ||| || || || | |||||||| | | || | | || || || | |||| Sbjct 231043 ACTCTACGAGCAATATGAACGCGAGGGCCGCTTCATGCGCCAGGTAGAAGCCCAGAAACT 230984 Query 97181 GTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGG 97239 ||| | |||| || || | ||| | || || || || || ||||| | || || | Sbjct 230983 TTGGTATGCCATTCTCGAAAG-TCAAATTGAAACAGGCACACCTTACATCTTATATAAAG 230925 Query 97240 ATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGT 97299 || | || | || ||||| || | | | || || |||||| |||| ||| | | Sbjct 230924 ATGCTTGTAACCAAAAGAGCAATCAGCAAAATCTTGGAACAATCAAGTGCTCTAATTTAT 230865 Query 97300 GCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | |||||||| | ||||| ||||||| || || | ||||||||| Sbjct 230864 GTACGGAAATAATCGAGTATTCCTCTCCTGATGAAATCGCAGTTTGC 230818 >seq19464 Length=44290 Score = 120 bits (132), Expect = 5e-22 Identities = 150/203 (74%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || |||||||| ||| ||||||||| |||||||||||||||| |||||||| ||| Sbjct 13243 CTTTTTCCCATTGAATATTCCGACATTTGGCAAATGTACAAAAAGGCACAGGCCTCTTTT 13184 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||||||||| || ||||||| ||| || ||| ||| || ||| Sbjct 13183 TGGACCGCTGAGGAGGTCGATTTGGGCAAGGACATGTCTGACTGGAAGAACCGAATGA-- 13126 Query 125115 GAAACT---GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || |||||||| || || |||||| | || || ||||| | || ||||| Sbjct 13125 -AACCTCAGGAGCGAGAATTCATCAAACACATTCTTGCGTTTTTTGCTGCTTCTGATGGC 13067 Query 125172 ATCGTCAACGACAATC-TGTTGA 125193 || || ||||| |||| |||||| Sbjct 13066 ATTGTGAACGAGAATCTTGTTGA 13044 Score = 111 bits (122), Expect = 2e-19 Identities = 412/630 (65%), Gaps = 23/630 (4%) Strand=Plus/Minus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| || || || ||||| || || | || || |||||||| ||| ||| Sbjct 12669 TGTTTCTACGGTTTTCAGATAATGATGGAAAATATTCATTCAGAAATGTATTCTCTTCTG 12610 Query 125292 ATTGACATGTACATTCGCGA-TCCGC--AACGTAAACACATGCTCTTTAACGCAATCGAC 125348 | ||| ||||| ||| ||| | ||||| | | ||||| |||||| || Sbjct 12609 CTAAACACATACATCACCGAGTCCACGGAACGTGATCGA---CTCTTCCGCGCAATTGAG 12553 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || |||| | || || |||||| | |||| | |||||||| | |||| || Sbjct 12552 ACAATGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAG 12493 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGG 125467 || |||||| || | | ||||||||||| || || || ||||| || || |||| Sbjct 12492 GCTGCGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGG 12433 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||||| || || || ||||| || ||||| || ||||||| || || || ||| Sbjct 12432 GCG-TTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAG 12374 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 || ||| | || || || ||||| || | ||| ||||| ||| ||| |||| Sbjct 12373 CAATGAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTT--- 12317 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC-ATCAACATTGTAACCG 125646 ||| | ||| || || | | ||||| | || ||||| || | | | Sbjct 12316 CAAACACCTG-ATC-----AACAAACCAAGCGAAGCGCGAATCTATCAA-ATCATTAAGG 12264 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || || || |||||||| ||||| || ||| | |||| ||| ||| | || | Sbjct 12263 ACGCTGTTGCCATCGAACAAGAATTTCTCACTGAAGCATTACCTGTCGCTATGTTGGGTA 12204 Query 125707 TGAACTGCAAGCTAATG-TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||||| | || ||| | || ||||| ||||| || || |||||||| || |||| Sbjct 12203 TGAACTGCGATCTGATGAAGAGA-TACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAG 12145 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATC 125824 | | ||| ||| | | || ||| |||||| || || || || || || || || Sbjct 12144 CTCAACTGCCAGAAGCTATGGAAGTCCACGAATCCGTTCGACTTTATGGAGCA-AATTTC 12086 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || || || || || || || || || || Sbjct 12085 CCTCGAAGGCAAAACGAATTTCTTTGAAAA 12056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740869785268480