Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq7279 226 2e-54 >seq7279 Length=10654 Score = 226 bits (250), Expect = 2e-54 Identities = 334/465 (72%), Gaps = 11/465 (2%) Strand=Plus/Plus Query 41843 TTCTGGCCGGGCAACCGGGACAAGGCCCGCAAGGCGGGGCTGATCCTCGCCGGCTACCAC 41902 || |||||||| ||| | | ||||| | || || ||| | || || ||||||||| Sbjct 7540 TTATGGCCGGGTTTCCGCGCCCAGGCCGGGGAGCAAGGCCTGCTGCTGGCGGGCTACCAC 7599 Query 41903 TACGTCCGGACCGGCGAC--CCCGC-CGCCCAGGCGCGGACATTCGTCGAGCACCTGGGG 41959 ||| |||| ||| |||| ||||| || ||||| ||| ||||| | |||||| | Sbjct 7600 TACATCCGCGCCGACGACGACCCGCGCGAGCAGGCCGAGACCTTCGTGGGGCACCTCGCC 7659 Query 41960 GACAAGTCGATCCCCGCCATGCTCGATTTCGAGGACGGCTCCGGCAACATCGACCAGTTC 42019 ||| | ||| ||||| |||||||||||||||||||||||||| | |||| | |||| Sbjct 7660 GACCTGACGACGCCCGCGATGCTCGATTTCGAGGACGGCTCCGGGGATATCGGCGTGTTC 7719 Query 42020 TGGGCGGTGAAAAACGAGATCGAAAAGCTCGGCGTCCAG-GTCCGCCTCTCCTACATACC 42078 ||||| ||| ||||||||||| ||||||| | || ||||| ||||||||||| || Sbjct 7720 TGGGCCGTGCGCGACGAGATCGAAGCCCTCGGCG-CGAGCGTCCGGCTCTCCTACATCCC 7778 Query 42079 CGACTGGTATTGGGAGCGCATCGGCAAGCCGGACCTGTCGAAGGTTCCGGGACTGATCTC 42138 || |||||| |||||| |||||||| || ||| | | | || || || || Sbjct 7779 CGGCTGGTACTGGGAGAGCATCGGCTCCCCCGACATCACTGGAGCCCCCGGCCTCGTCCA 7838 Query 42139 GTCCGAATACGTCAGCGGCACCGGGTATGCATCGGTGCTTTACCCGGGCAA---CAACAG 42195 ||| ||||||| |||| |||| | || || | || || | |||| || Sbjct 7839 ATCCCGCTACGTCACCGGCTCCGGCGACGCCTCCGCCCTCTATC--AGCAAGTGTCCGAG 7896 Query 42196 CAACTTCTGGAAAGCGTACGGCGGCCGGACGCCCGACGTCCTGCAGTTCACCGACCGCGC 42255 | | | ||| | | ||||||||| || |||| |||||| || ||||||||||| || Sbjct 7897 GAGC-TGTGGGAGCCCTACGGCGGCGCGAGCCCCGTCGTCCTCCAATTCACCGACCGAGC 7955 Query 42256 CCTCGTGGCCGGCAAGTCGGTCGACGCCAACGCCTTCCGGGGAAC 42300 ||| || ||||| || | ||||||||||||||||||||||||| Sbjct 7956 CCTTGTCGCCGGGAACACCCTCGACGCCAACGCCTTCCGGGGAAC 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354554819368128