Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7231 89.7 4e-13 seq19980 86.0 5e-12 >seq7231 Length=219762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||| || | | | ||||| ||||| || || || || |||||||||||||| | Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || || | ||||| || ||||| || || | ||||| | ||||||||| ||| Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | ||| || || || |||||| ||||| | ||| ||||| ||||| Sbjct 92276 GATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || || || || || |||||||||||| Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || || || || || ||||| || | || |||| | ||||||| ||||| Sbjct 92595 GTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTG 92654 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||||||| | || | || |||||| || || | || || ||||| |||||| Sbjct 92655 TTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTT 92714 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | ||| ||||| || || || | ||||||||| || || || Sbjct 92715 CGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGT 92774 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || |||||||| Sbjct 92775 CAAAGTCTTTACGAAGATTTGCAT 92798 >seq19980 Length=299602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 || |||||||||||||||||||| |||| | || |||||| || ||||| || Sbjct 144932 GTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGT----GCGTCCATCTTCAAGCTGCTT 144877 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 || ||| | || | |||||| ||||| ||| | || || ||||| ||| || Sbjct 144876 TCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGC 144817 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 ||||| | | | ||||| ||||||| ||| | ||| ||||| || || || | Sbjct 144816 CTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAG 144757 Query 19021 AGTTTTGACAAAAATTTGCAT 19041 |||||||| ||||||||||| Sbjct 144756 GGTTTTGACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469484312512