Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 89.7 4e-13
seq19980 86.0 5e-12
>seq7231
Length=219762
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873
|||||| || | | | ||||| ||||| || || || || |||||||||||||| |
Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215
Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933
|| || | ||||| || ||||| || || | ||||| | ||||||||| |||
Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275
Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993
| ||| || || || |||||| ||||| | ||| ||||| |||||
Sbjct 92276 GATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335
Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | ||| |||||||| || || || || || || ||||||||||||
Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
||| | ||| || || || || || ||||| || | || |||| | ||||||| |||||
Sbjct 92595 GTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTG 92654
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
|||||||||| | || | || |||||| || || | || || ||||| ||||||
Sbjct 92655 TTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGAATTTT 92714
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
| || || | ||| ||||| || || || | ||||||||| || || ||
Sbjct 92715 CGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGT 92774
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || || ||||||||
Sbjct 92775 CAAAGTCTTTACGAAGATTTGCAT 92798
>seq19980
Length=299602
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900
|| |||||||||||||||||||| |||| | || |||||| || ||||| ||
Sbjct 144932 GTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGT----GCGTCCATCTTCAAGCTGCTT 144877
Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960
|| ||| | || | |||||| ||||| ||| | || || ||||| ||| ||
Sbjct 144876 TCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGC 144817
Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020
||||| | | | ||||| ||||||| ||| | ||| ||||| || || || |
Sbjct 144816 CTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAG 144757
Query 19021 AGTTTTGACAAAAATTTGCAT 19041
|||||||| |||||||||||
Sbjct 144756 GGTTTTGACGAAAATTTGCAT 144736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414469484312512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |