Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq7231 102 5e-17 seq19980 82.4 5e-11 >seq7231 Length=219762 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||| |||| || || ||||| || ||||||||||| |||| | || Sbjct 92169 CGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCA 92228 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| |||||| ||||| | ||| ||||| || | ||| |||||||| || Sbjct 92229 TCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTA 92288 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || | ||| ||||| ||| || || || ||| | ||| || || ||| Sbjct 92289 TCCTGAATTTTTGCC---TTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTT 92345 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || | || || |||||||||||||| Sbjct 92346 ATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | || | ||| | |||||| || || || || || ||||| || || Sbjct 92799 ACCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGA 92858 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | ||| || | ||| |||||| ||| || | ||| || ||||| | || Sbjct 92859 TAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGG 92918 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||| ||||| || ||| | |||||| | | ||| |||||| | || | ||| Sbjct 92919 AATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAAC 92978 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 92979 TTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 >seq19980 Length=299602 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| || | ||| | ||||| ||||| || || ||||||||||| Sbjct 144507 ACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGA 144448 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || ||| ||||| || || ||| ||| ||||| | |||||||| | ||| Sbjct 144447 AAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGG 144388 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || || || || |||| | || || ||| || || || | | || Sbjct 144387 AATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCAC 144328 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || | |||||| || ||||||||||| Sbjct 144327 CTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318698157434304