Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7231 118 8e-22 seq19980 86.0 4e-12 >seq7231 Length=219762 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| | ||| || ||||| || || ||||| ||||||||||| | || |||| || Sbjct 93233 CACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTC 93292 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| |||||||| ||||| ||||| ||||||||||| |||| | || ||||| || Sbjct 93293 CAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTG 93352 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| |||||| | ||| || || | ||||| || || | ||| || || || Sbjct 93353 GATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTT 93412 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | |||||| ||||| || ||||| Sbjct 93413 GCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 >seq19980 Length=299602 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/234 (68%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 43888 TCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATA 43947 |||||| ||||||| | ||| | ||||| ||| || || |||||||||||| || || Sbjct 145196 TCATCA-CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTA 145138 Query 43948 ATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTC 44007 ||| | || |||| || | ||||| ||||| || ||||||| ||| || || Sbjct 145137 GTCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATC 145078 Query 44008 CTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGG 44067 | || | ||||| || ||| |||||| ||| || | ||| ||||| || Sbjct 145077 GGGGGGAATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGG 145018 Query 44068 CTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || | || || ||||| ||||| | || || ||||| || ||||| Sbjct 145017 CTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || ||||| ||||| || ||||| || |||| |||||||| | || | || || ||| Sbjct 144434 TCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTA 144375 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||| || ||||| | | | ||||| | | |||||| || | || || Sbjct 144374 TCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATA 144315 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 || || ||||||||||| |||||||| |||||||| || Sbjct 144314 GTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATTTC 144277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354689185874304