Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7231 230 5e-55 seq19980 154 3e-32 >seq7231 Length=219762 Score = 230 bits (254), Expect = 5e-55 Identities = 195/239 (82%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 104322 CTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381 |||||||| ||| || | || || || || ||||| | ||||| ||||||||||| | Sbjct 99971 CTTTATTT--TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGT 100028 Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 |||||||||||||||| | ||| ||||| || ||||| |||||||||||||||||||||| Sbjct 100029 TATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTT 100088 Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 |||||||||| ||||||||||| |||||||| || || || || ||||| | |||||| | Sbjct 100089 GATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCAC 100148 Query 104502 TAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | | ||||||||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 100149 TGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207 Score = 203 bits (224), Expect = 7e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||||| || |||| ||||| ||||||||||| |||||||| Sbjct 100205 ATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCT 100264 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||| |||||||| || || || |||||||| |||| ||| || ||||| || Sbjct 100265 GATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGC 100324 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||||||||| || || ||||| | |||||||||||||| Sbjct 100325 GGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCA 100384 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| || || || |||||||| || |||||||| Sbjct 100385 ACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || |||||||| ||||| | || || ||||| || ||||| ||||| || ||||| | Sbjct 100673 AGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGT 100732 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | |||||||||||||| |||| |||||||| || || || || || || Sbjct 100733 CCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCC 100792 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || ||||||||||| || |||||||| | ||||| || ||| ||||| || || Sbjct 100793 TTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTG 100852 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||||| || || ||||| || || ||||||||| Sbjct 100853 ATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || ||| ||||| || || ||||| ||||| || | |||||| Sbjct 92815 AGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCC 92874 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||||||||||||||| || || | |||||| ||||| || || || ||||| || Sbjct 92875 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT 92934 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || |||||||| || || | ||| ||||| || || || || ||||| || || Sbjct 92935 TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTT 92994 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| ||||| ||||| ||||||||| Sbjct 92995 TTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||| || || || ||||||||||| || || || || | |||||||| Sbjct 93690 ACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCC 93749 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || | || ||||| ||||| || || ||||||||||| Sbjct 93750 AGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGG 93809 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||||| || |||||||| | |||||||| ||||| || || || || || || || Sbjct 93810 ATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTT 93869 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| Sbjct 93870 CCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || ||||| || ||||| ||||| || || || | |||||| Sbjct 100450 AAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTC 100509 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||| || | |||||||||||| ||||| || |||||||| || Sbjct 100510 TTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTC 100569 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || ||||| ||||| || | || || || || || || || |||||||| Sbjct 100570 TTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGT 100629 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||||| ||||| || || |||||||| Sbjct 100630 CTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||||||||| || || || || || | || || || |||||||||||| Sbjct 92187 GTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTGTTTTCCA 92246 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct 92247 GCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTTTGCCTTT 92306 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| || || ||||| || || || || || || || | || Sbjct 92307 ACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACGTC 92366 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 92367 TTAACGAAAATTTGCATT 92384 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | |||| ||| || | || | || ||| || ||||| || |||||| Sbjct 93441 ATTCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCA 93500 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | ||| || || ||||||||||| || ||||| || | || || |||||| Sbjct 93501 CTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGA 93560 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| || || || || || ||||| | |||||||| ||||| Sbjct 93561 GGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCA 93620 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| || || || || || || || |||||||| Sbjct 93621 ACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || || || || | |||||| ||||| || || ||| Sbjct 93930 GTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCA 93989 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || || |||||||||||||| ||||||| || Sbjct 93990 GCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTG 94049 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || ||||| ||||| || ||||| || ||||| | |||| Sbjct 94050 ACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTT 94109 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| || |||||||| Sbjct 94110 TTCACAAAGATTTGCATTTT 94129 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 |||| || | ||| || || || | || ||||||||||| || || ||||| || || Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 ||||||||||| || || ||||| || ||||| || | | ||| || ||||| || || Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || |||||||| || || || || || || | |||||| ||||| ||||| Sbjct 92695 CCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCC 92754 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| ||||| || || | || ||||| || || ||||| Sbjct 92755 AAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 |||| || | ||| || ||||| | || ||| |||||||| ||||| || || Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 || | || || || | ||||||||||||||||| | | || || |||||||| || Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || ||||| ||||| ||||||||||| |||||||| | || ||| || || || || Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || || || || || ||||| ||||||||| Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 >seq19980 Length=299602 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | || || || || || ||||| ||||| || ||||| | || || Sbjct 144720 AAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATC 144661 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||||||||| || ||||| ||||||||||| |||||||| || || || ||||| || Sbjct 144660 TTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTC 144601 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || ||||| || | || || |||||| ||||| || || || || Sbjct 144600 TTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGT 144541 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| |||||||| Sbjct 144540 TTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||||||||| || || || ||||| ||||| | |||||||| Sbjct 144488 ACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCC 144429 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| |||||||| |||| |||||| || || || || || || || ||||| ||| Sbjct 144428 AACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGA 144369 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||| | ||||| || || ||||| || || |||||||| Sbjct 144368 ATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTT 144309 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || || | ||||| ||||| || ||||||| Sbjct 144308 CCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || |||||||| ||||| || || || | || || Sbjct 144948 AAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATC 144889 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| ||||| || | ||||||||||| || || |||||||| || || Sbjct 144888 TTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTC 144829 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || ||||| || || | ||||| ||| || || || | || || || Sbjct 144828 TTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGT 144769 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||| ||||| || || || ||||| Sbjct 144768 CTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151096745133184