Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 230 5e-55
seq19980 154 3e-32
>seq7231
Length=219762
Score = 230 bits (254), Expect = 5e-55
Identities = 195/239 (82%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 104322 CTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381
|||||||| ||| || | || || || || ||||| | ||||| ||||||||||| |
Sbjct 99971 CTTTATTT--TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGT 100028
Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441
|||||||||||||||| | ||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 100029 TATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTT 100088
Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501
|||||||||| ||||||||||| |||||||| || || || || ||||| | |||||| |
Sbjct 100089 GATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCAC 100148
Query 104502 TAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
| | ||||||||| ||||| ||||| || || || || || || || || |||||||||
Sbjct 100149 TGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207
Score = 203 bits (224), Expect = 7e-47
Identities = 183/230 (80%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| |||| || | ||||| || |||| ||||| ||||||||||| ||||||||
Sbjct 100205 ATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCT 100264
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
||||| |||| |||||||| || || || |||||||| |||| ||| || ||||| ||
Sbjct 100265 GATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGC 100324
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || ||||||||||| || || ||||| | ||||||||||||||
Sbjct 100325 GGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCA 100384
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || || ||||| || || || |||||||| || ||||||||
Sbjct 100385 ACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 174 bits (192), Expect = 4e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| |||||||| ||||| | || || ||||| || ||||| ||||| || ||||| |
Sbjct 100673 AGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGT 100732
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|||||||| | |||||||||||||| |||| |||||||| || || || || || ||
Sbjct 100733 CCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCC 100792
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| || ||||||||||| || |||||||| | ||||| || ||| ||||| || ||
Sbjct 100793 TTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTG 100852
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||||||||| || || ||||| || || |||||||||
Sbjct 100853 ATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| || || ||| ||||| || || ||||| ||||| || | ||||||
Sbjct 92815 AGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCC 92874
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||||||||||||||| || || | |||||| ||||| || || || ||||| ||
Sbjct 92875 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT 92934
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || |||||||| || || | ||| ||||| || || || || ||||| || ||
Sbjct 92935 TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTT 92994
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || ||||| ||||| ||||| |||||||||
Sbjct 92995 TTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||| || || || ||||||||||| || || || || | ||||||||
Sbjct 93690 ACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCC 93749
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || || | || ||||| ||||| || || |||||||||||
Sbjct 93750 AGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGG 93809
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
|| ||||| || |||||||| | |||||||| ||||| || || || || || || ||
Sbjct 93810 ATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTT 93869
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||||||
Sbjct 93870 CCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || ||||| || ||||| ||||| || || || | ||||||
Sbjct 100450 AAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTC 100509
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| |||||||| || ||||| || | |||||||||||| ||||| || |||||||| ||
Sbjct 100510 TTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTC 100569
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || || ||||| ||||| || | || || || || || || || ||||||||
Sbjct 100570 TTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGT 100629
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || ||||| ||||| || || ||||||||
Sbjct 100630 CTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||||||||| || || || || || | || || || ||||||||||||
Sbjct 92187 GTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTCGAGTTGTTTTCCA 92246
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| |||||||| || || ||||| ||||||||||| ||||| |||
Sbjct 92247 GCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGAATTTTTGCCTTT 92306
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | |||||| || || ||||| || || || || || || || | ||
Sbjct 92307 ACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACGTC 92366
Query 104543 TTTACAAATATCTGCATT 104560
|| || || || ||||||
Sbjct 92367 TTAACGAAAATTTGCATT 92384
Score = 136 bits (150), Expect = 9e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | |||| ||| || | || | || ||| || ||||| || ||||||
Sbjct 93441 ATTCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCA 93500
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || | ||| || || ||||||||||| || ||||| || | || || ||||||
Sbjct 93501 CTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGA 93560
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||| || || || || || ||||| | |||||||| |||||
Sbjct 93561 GGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCA 93620
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| ||||| |||||||| || || || || || || || ||||||||
Sbjct 93621 ACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| ||||| || || || || || | |||||| ||||| || || |||
Sbjct 93930 GTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCA 93989
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| ||||| || || || |||||||||||||| ||||||| ||
Sbjct 93990 GCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTG 94049
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || ||||| ||||| || ||||| || ||||| | ||||
Sbjct 94050 ACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTT 94109
Query 104543 TTTACAAATATCTGCATTTT 104562
|| ||||| || ||||||||
Sbjct 94110 TTCACAAAGATTTGCATTTT 94129
Score = 134 bits (148), Expect = 3e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395
|||| || | ||| || || || | || ||||||||||| || || ||||| || ||
Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634
Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455
||||||||||| || || ||||| || ||||| || | | ||| || ||||| || ||
Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||| || |||||||| || || || || || || | |||||| ||||| |||||
Sbjct 92695 CCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCC 92754
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||||| ||||| || || | || ||||| || || |||||
Sbjct 92755 AAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 127 bits (140), Expect = 5e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395
|||| || | ||| || ||||| | || ||| |||||||| ||||| || ||
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455
|| | || || || | ||||||||||||||||| | | || || |||||||| ||
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
|| ||||| ||||| ||||||||||| |||||||| | || ||| || || || ||
Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || || || || || ||||| |||||||||
Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
>seq19980
Length=299602
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
|||||| ||||| | || || || || || ||||| ||||| || ||||| | || ||
Sbjct 144720 AAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATC 144661
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|||||||||||| || ||||| ||||||||||| |||||||| || || || ||||| ||
Sbjct 144660 TTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTC 144601
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || || || || ||||| || | || || |||||| ||||| || || || ||
Sbjct 144600 TTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGT 144541
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || |||||||| ||||||||
Sbjct 144540 TTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
Score = 150 bits (166), Expect = 4e-31
Identities = 160/211 (76%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || ||||||||||| || || || ||||| ||||| | ||||||||
Sbjct 144488 ACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCC 144429
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| ||||| |||||||| |||| |||||| || || || || || || || ||||| |||
Sbjct 144428 AACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGA 144369
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || |||||||| | ||||| || || ||||| || || ||||||||
Sbjct 144368 ATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTT 144309
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTT 104561
|| || | ||||| ||||| || |||||||
Sbjct 144308 CCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || || |||||||| ||||| || || || | || ||
Sbjct 144948 AAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATC 144889
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| ||||| || | ||||||||||| || || |||||||| || ||
Sbjct 144888 TTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTC 144829
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||||| || ||||| || || | ||||| ||| || || || | || || ||
Sbjct 144828 TTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGT 144769
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| |||||||| ||||| || || || |||||
Sbjct 144768 CTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151096745133184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |