Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17365 111 8e-20 seq17726 109 3e-19 seq1773 107 1e-18 seq19817 105 3e-18 seq1355 102 4e-17 seq18847 100 1e-16 seq1146 100 1e-16 >seq17365 Length=60615 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 7956 TTGGCCCATGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGA 8015 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 8016 CTGAGCTAATAGGCC 8030 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||| | | ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 7744 AAGTTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAAC 7803 Query 11512 CAACTGAGCTAATGGGCCG 11530 | ||||||||| ||||||| Sbjct 7804 CGACTGAGCTAGTGGGCCG 7822 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7139 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7198 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 7199 TGAGCTAGTAGGCC 7212 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7551 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7610 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 7611 TGAGCTAGTAGGCC 7624 >seq17726 Length=138386 Score = 109 bits (120), Expect = 3e-19 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| ||||||| | | ||||||||||| ||||||||||||||||||||| Sbjct 109853 AATAAAAGATC----TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCAC 109798 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 |||||||| ||| ||||||||| |||||| |||| Sbjct 109797 GACGCTCTAACCGACTGAGCTAGTGGGCCACCGAC 109763 >seq1773 Length=850 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||| | | ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 800 AAGTTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAAC 741 Query 11512 CAACTGAGCTAATGGGCC 11529 | ||||||||||| |||| Sbjct 740 CGACTGAGCTAATAGGCC 723 >seq19817 Length=121538 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || || |||||| | | ||||||||||| |||||||||||||||||||||||||| Sbjct 71627 AAAAGCAGAT-GGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGC 71569 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||| ||||||||| |||||| Sbjct 71568 TCTAACCGACTGAGCTAGTGGGCC 71545 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 57551 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 57610 Query 11516 TGAGCTAATGGGCC 11529 ||||||| |||||| Sbjct 57611 TGAGCTAGTGGGCC 57624 >seq1355 Length=40668 Score = 102 bits (112), Expect = 4e-17 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| | ||||||| | ||||||| | | ||||||||||| |||||||||||||||||| Sbjct 38448 ATTATTTAAAAATCGA--TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAG 38505 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||| ||| ||||||||| | |||| Sbjct 38506 CACGATGCTCTAACCGACTGAGCTAGTAGGCC 38537 >seq18847 Length=46969 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 26200 AAGTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACC 26259 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||| | |||| Sbjct 26260 GACTGAGCTAGTAGGCC 26276 >seq1146 Length=45636 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 35886 TGGCCCACGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 35827 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 35826 TGAGCTAGTAGGCC 35813 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261426033778048