Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq17365 111 8e-20
seq17726 109 3e-19
seq1773 107 1e-18
seq19817 105 3e-18
seq1355 102 4e-17
seq18847 100 1e-16
seq1146 100 1e-16
>seq17365
Length=60615
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 7956 TTGGCCCATGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGA 8015
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 8016 CTGAGCTAATAGGCC 8030
Score = 109 bits (120), Expect = 3e-19
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 7744 AAGTTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAAC 7803
Query 11512 CAACTGAGCTAATGGGCCG 11530
| ||||||||| |||||||
Sbjct 7804 CGACTGAGCTAGTGGGCCG 7822
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 7139 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7198
Query 11516 TGAGCTAATGGGCC 11529
||||||| | ||||
Sbjct 7199 TGAGCTAGTAGGCC 7212
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 7551 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7610
Query 11516 TGAGCTAATGGGCC 11529
||||||| | ||||
Sbjct 7611 TGAGCTAGTAGGCC 7624
>seq17726
Length=138386
Score = 109 bits (120), Expect = 3e-19
Identities = 81/95 (85%), Gaps = 4/95 (4%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| ||| ||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 109853 AATAAAAGATC----TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCAC 109798
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535
|||||||| ||| ||||||||| |||||| ||||
Sbjct 109797 GACGCTCTAACCGACTGAGCTAGTGGGCCACCGAC 109763
>seq1773
Length=850
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 800 AAGTTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAAC 741
Query 11512 CAACTGAGCTAATGGGCC 11529
| ||||||||||| ||||
Sbjct 740 CGACTGAGCTAATAGGCC 723
>seq19817
Length=121538
Score = 105 bits (116), Expect = 3e-18
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| || || |||||| | | ||||||||||| ||||||||||||||||||||||||||
Sbjct 71627 AAAAGCAGAT-GGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGC 71569
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||| ||||||||| ||||||
Sbjct 71568 TCTAACCGACTGAGCTAGTGGGCC 71545
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 57551 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 57610
Query 11516 TGAGCTAATGGGCC 11529
||||||| ||||||
Sbjct 57611 TGAGCTAGTGGGCC 57624
>seq1355
Length=40668
Score = 102 bits (112), Expect = 4e-17
Identities = 78/92 (85%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|||| | ||||||| | ||||||| | | ||||||||||| ||||||||||||||||||
Sbjct 38448 ATTATTTAAAAATCGA--TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAG 38505
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||| ||| ||||||||| | ||||
Sbjct 38506 CACGATGCTCTAACCGACTGAGCTAGTAGGCC 38537
>seq18847
Length=46969
Score = 100 bits (110), Expect = 1e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 26200 AAGTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACC 26259
Query 11513 AACTGAGCTAATGGGCC 11529
||||||||| | ||||
Sbjct 26260 GACTGAGCTAGTAGGCC 26276
>seq1146
Length=45636
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 35886 TGGCCCACGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 35827
Query 11516 TGAGCTAATGGGCC 11529
||||||| | ||||
Sbjct 35826 TGAGCTAGTAGGCC 35813
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261426033778048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |