Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7231 125 6e-24 seq19980 105 6e-18 >seq7231 Length=219762 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 |||||| || | |||||||||| | | ||| | |||||||| ||||||||| |||| Sbjct 93251 TTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCCTCCAACTGTTTTCCAGCAAA 93310 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 || || | |||||| || |||||||| || |||||||| | || ||||| ||||| Sbjct 93311 AATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCTTTGACATT 93370 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | | ||||| | | ||||| |||| |||||| || || || || ||||| || || Sbjct 93371 TTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGAC 93430 Query 94996 AAAGATCTGCAT 95007 |||||||||||| Sbjct 93431 AAAGATCTGCAT 93442 Score = 122 bits (134), Expect = 8e-23 Identities = 175/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||||| | || | || | ||| | |||||| || || || | | Sbjct 100196 AAAATCTGCATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATG 100255 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| || | |||| ||| | || || ||||| || || |||||||||| |||| Sbjct 100256 TTATAGTC--TGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTT 100313 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||| || ||||||||||| ||||| | ||| |||||||| ||| ||| || | Sbjct 100314 GCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTAT 100373 Query 94947 CAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 | || || || || || | ||||| || ||||| || || ||||| || ||||||||| Sbjct 100374 C-GCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGC 100432 Query 95006 AT 95007 || Sbjct 100433 AT 100434 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | ||| || | || | ||| | ||| |||||||| || | || |||||| Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGG-- 93957 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||||| ||||| || || | || || | | ||||||||||| | Sbjct 93958 AGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTG 94017 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||||||||| || | || |||| ||||||| ||| ||||| | || | Sbjct 94018 GAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTA 94077 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | ||||| ||||| ||||| | |||||||||||||| ||||| Sbjct 94078 CGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || ||||| ||| ||||||| || || || ||||||||||| |||||||||||| Sbjct 100508 TCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTG 100567 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || | | ||||||| | | || || || | || || Sbjct 100568 TCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATA 100627 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| |||||||| ||||||||||| Sbjct 100628 GTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 107 bits (118), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | |||| || || |||||||| | |||||||| | | || || | Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATC--TGAGAGGGTACGGC 93741 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || ||||| || || || ||||||| | | ||||||||| ||||| || || |||| Sbjct 93742 CGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTT 93801 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||||||||| || | | || || | | || || |||| |||| Sbjct 93802 TATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGA 93861 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||||| || || ||||||||||||||||| Sbjct 93862 TGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| | | || | ||||| || | |||||| || || || | |||||| || Sbjct 99979 TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG- 100037 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 |||| || || ||| || |||||||| || |||| |||| || || ||||| ||| Sbjct 100038 -ATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGA 100096 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||||||||| | |||||| ||||||||| | | || ||| | || Sbjct 100097 GGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCT 100156 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| ||||| || || || || ||||| || |||||||| Sbjct 100157 ACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||||||| ||||||||||||| || || ||||| |||||||| || ||| Sbjct 100736 TCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTG 100795 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||||||||||| ||| || || | || || |||| ||||| Sbjct 100796 TCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATA 100855 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||| || |||||||| Sbjct 100856 GTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | || ||||||||| | ||| || || || | |||| || |||| Sbjct 93461 CACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGA--GTGTGCGACCATCC 93518 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||||||| | || || | | |||||| || ||||||||||| || ||||| Sbjct 93519 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 93578 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||||| ||||| ||| | | || || | | || || |||| ||||| || Sbjct 93579 TGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTC 93638 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || ||||||||||||| Sbjct 93639 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATGC 93672 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| | | |||| ||||||||||| ||| ||||| || || | || |||||| Sbjct 92156 TCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGA 92215 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || |||||| || |||||||| | || || | | |||||||| || || Sbjct 92216 CAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGG 92275 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| || || | |||||||||||| ||| ||| || || | | | || || Sbjct 92276 GATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||||||||| || | || || || || || ||||| Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || |||||||| ||||||| | | || || || || ||||| || |||||| Sbjct 92872 TCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTG 92931 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||||| || || ||| | | ||||| || ||| || || |||| || || Sbjct 92932 TCTTGAATTTTCGCTTTTACGTTCTCAATGGTGTC-GCTTGGCTCAACTTCAAGTGTTAT 92990 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| ||||| ||||||||||| |||||||| Sbjct 92991 TGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 >seq19980 Length=299602 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| ||| ||||||||| || |||||||| || || ||||| ||||| Sbjct 144663 ATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTT 144604 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | ||||||| | || || || | ||||| Sbjct 144603 GTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGAT 144544 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || ||||| || |||||||||||||| Sbjct 144543 GGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || ||||| || | || | || ||||| || || | ||| ||||| Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || | || |||| |||||| || |||||||||| || ||||| ||||| | Sbjct 144446 AGAGTACGTCCG--TCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGG 144389 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || || || | ||| || |||||||| ||| || |||| || | Sbjct 144388 GAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCA 144329 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||| || ||||| || | |||||||||||| || ||||| Sbjct 144328 CCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448176616769280