Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20303 192 9e-45 seq1993 192 9e-45 seq1896 192 9e-45 seq18175 190 3e-44 seq17297 185 1e-42 seq4957 176 7e-40 seq973 165 1e-36 >seq20303 Length=7771 Score = 192 bits (212), Expect = 9e-45 Identities = 199/261 (76%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| ||||||||||| || || ||||||||||| || Sbjct 6249 CGCTAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCAGCCAT 6308 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||||||||| || ||||||||| | || || ||| |||| || || | Sbjct 6309 CCGTCGTTTGGCTCGTCGTGGAGGTGTCAAGCGTATTTCCGGTTTGATCTACGAGGAAAC 6368 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| ||| || |||||||| Sbjct 6369 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCTGTCACTTATACCGA 6428 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||| || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 6429 ACATGCCAAAAGAAAGACCGTAACCGCTATGGATGTTGTCTATGCCCTCAAAAGGCAAGG 6488 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 6489 ACGCACCCTCTACGGCTTTGG 6509 >seq1993 Length=4406 Score = 192 bits (212), Expect = 9e-45 Identities = 199/261 (76%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| ||||||||||| || || ||||||||||| || Sbjct 1523 CGCTAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCAGCCAT 1464 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||||||||| || ||||||||| | || || ||| |||| || || | Sbjct 1463 CCGTCGTTTGGCTCGTCGTGGAGGTGTCAAGCGTATTTCCGGTTTGATCTACGAGGAAAC 1404 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| ||| || |||||||| Sbjct 1403 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCTGTCACTTATACCGA 1344 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||| || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 1343 ACATGCCAAAAGAAAGACCGTAACCGCTATGGATGTTGTCTATGCCCTCAAAAGGCAAGG 1284 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 1283 ACGCACCCTCTACGGCTTTGG 1263 >seq1896 Length=13079 Score = 192 bits (212), Expect = 9e-45 Identities = 199/261 (76%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| ||||||||||| || || ||||||||||| || Sbjct 11946 CGCTAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCAGCCAT 11887 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||||||||| || ||||||||| | || || ||| |||| || || | Sbjct 11886 CCGTCGTTTGGCTCGTCGTGGAGGTGTCAAGCGTATTTCCGGTTTGATCTACGAGGAAAC 11827 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| ||| || |||||||| Sbjct 11826 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCTGTCACTTATACCGA 11767 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||| || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 11766 ACATGCCAAAAGAAAGACCGTAACCGCTATGGATGTTGTCTATGCCCTCAAAAGGCAAGG 11707 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 11706 ACGCACCCTCTACGGCTTTGG 11686 >seq18175 Length=3548 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| ||||||||||| || || ||||||||||| || Sbjct 249 CGCTAAGCGTCACCGAAAAGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCAGCCAT 190 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||||||||| || ||||||||| | || || ||| |||| || || | Sbjct 189 CCGTCGTTTGGCTCGTCGTGGAGGTGTCAAGCGTATTTCCGGTTTGATCTACGAGGAAAC 130 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| ||| || |||||||| Sbjct 129 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCTGTCACTTATACCGA 70 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||| || ||| | |||||| | |||||||| | ||| | ||||| Sbjct 69 ACATGCCAAAAGAAAGACCGTAACCGCTATGGATGTTGTCTATGCCCTCAAAAGGCAAGG 10 Query 16672 CCG 16674 || Sbjct 9 ACG 7 >seq17297 Length=3878 Score = 185 bits (204), Expect = 1e-42 Identities = 197/260 (76%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | |||||| |||||||| ||||| |||||||||||||| || Sbjct 1374 GCCAAACGTCACCGTAAAGTTCTTCGTGATAACATTCAAGGTATCACCAAGCCAGCCATT 1433 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| |||||||| |||||||| ||||||| || |||| ||||||| | Sbjct 1434 CGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGCATCTCTGGTCTGATCTACGAAGAGACT 1493 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || | ||||| | | ||| |||| ||| ||| || ||| |||||| Sbjct 1494 CGGGGTGTCCTTAAAGTATTCCTTGAAAACGTCATCCGTGACGCTGTCACCTACACCGAG 1553 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | |||||||||||| ||||||| ||||||| || | || | || || Sbjct 1554 CACGCCAAAAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGGGA 1613 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 1614 CGTACCCTTTACGGTTTCGG 1633 >seq4957 Length=161903 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | |||||| ||||||||||| |||||||||||||| || || Sbjct 10040 CGCCAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 9981 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| ||||| ||| | || || || |||| || || | Sbjct 9980 CCGTCGTCTAGCGCGTCGTGGTGGTGTCAAACGTATTTCCGGCCTGATCTACGAGGAAAC 9921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| | | |||||||| ||| ||| | ||| ||||| Sbjct 9920 CCGAGGAGTGCTCAAAGTGTTCCTGGAAAACGTTATCCGTGACGCTGTTACCTACACCGA 9861 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || ||||| | ||||| ||||| Sbjct 9860 GCACGCCAAGAGAAAGACAGTTACCGCCATGGATGTTGTATATGCTCTCAAACGGCAAGG 9801 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | || || ||||| |||| Sbjct 9800 CCGCACTCTGTACGGATTTGGTGGTTA 9774 >seq973 Length=50102 Score = 165 bits (182), Expect = 1e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | | |||||| |||||||| || | |||||||||||||| || Sbjct 3053 CGCCAAACGTCACCGTAAAGTTCTTCGTGATAACATTCAGGATATCACCAAGCCAGCCAT 3112 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||| ||||| ||| | || ||||||| | ||||||| || |||| ||||||| Sbjct 3113 CCTTCGTCTCGCTCGCCGTAGCGGTGTCAAGCCTATCTCTGGTCTGATCTACGAAGAGAC 3172 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || ||| | | | ||| |||| ||| ||| || ||| ||||| Sbjct 3173 TCGGGGTGTCCTTAAAGCATTCGTTGAAAACGTCATCCGTGACGCTGTCACCTACACCGA 3232 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||||||| |||||| ||||||| || | || | || || Sbjct 3233 GCACGCCAAAAGGAAGACTGTCACCGGCATGGACGTCGTCTACGCCCTCAAGAGGCAGGG 3292 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 3293 ACGTATCCTTTACGGTTTCGG 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056504250464