Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq19464 102 9e-17 >seq19464 Length=44290 Score = 102 bits (112), Expect = 9e-17 Identities = 451/710 (64%), Gaps = 10/710 (1%) Strand=Plus/Plus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183 |||||||||||| || |||| || ||| || | || ||||| || | ||||| ||| Sbjct 11974 TATTTAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCTTTGTTAGCCATAACACCCGC 12033 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| || || |||| ||| | |||||| || ||||| || || ||||| | || || Sbjct 12034 TTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTG 12093 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT-A 21302 |||||||| || || ||||| || || ||| || | || || || ||| | Sbjct 12094 CTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTC-GATGA 12152 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | | ||| || || || || || ||| ||| | || || |||||||| | || Sbjct 12153 GCAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACA 12212 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 ||||| | |||| || | ||| || ||| || | || || || ||| | Sbjct 12213 TAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGA 12272 Query 21423 TATTTAT-TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 | || || || | | | || || | | | ||||| ||||||| ||| || Sbjct 12273 T-TTGATAGATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGAACATCAGACAGGCG 12331 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || || |||| |||||| || | || | ||||| || || | || ||| Sbjct 12332 AAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGC 12391 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC--CTGAAAAGAAAATGC 21599 || | |||| |||||| | ||| || || | ||||| || | |||||| ||||||| Sbjct 12392 ATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAA--AAAATGC 12449 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 | || || ||||| ||||| || | || |||||||| | || || | | |||| Sbjct 12450 CTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCC 12509 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 | | | ||||| | ||||| | ||||| || ||||| ||||| || || | Sbjct 12510 ACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGA 12569 Query 21720 GATGAt-ttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 | ||| || | | || ||||| ||| | ||||||||| Sbjct 12570 GTCGATCACGTTCCGTGGAC-TCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCT 12628 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||| |||||||| ||| ||||||||| ||||| ||||| | ||||| Sbjct 12629 GAATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTC 12678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531764846155520