Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19563 399 3e-106 seq19464 170 2e-37 >seq19563 Length=274849 Score = 399 bits (442), Expect = 3e-106 Identities = 990/1491 (66%), Gaps = 30/1491 (2%) Strand=Plus/Plus Query 61985 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62041 |||||| | ||||| ||||| | |||| ||| || |||||||| || |||||||| Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950 Query 62042 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62101 ||| || || ||||| || |||| || || || ||||| |||| ||| |||| | Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010 Query 62102 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62161 | || |||| ||||| ||| | |||||||| ||||||||||||||||| | || || Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070 Query 62162 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62221 |||||| || ||||| | || ||||| || ||||| | || || | ||||| Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130 Query 62222 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC-TTG- 62279 | || ||||| || |||| | || ||| || || | || |||| ||| Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGC----AACCAATTCGTTGC 230186 Query 62280 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337 ||| |||||||| | | | || |||| | || |||| ||||| |||| || | Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246 Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397 ||||||| || || || || |||| || | ||| || || ||||| ||||| | | Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306 Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62457 | ||||| || || | ||| || || || |||||||| ||||||||||||| | | | Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366 Query 62458 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 |||| | | ||| ||| | || ||| ||||||| | |||| | ||||||| Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCT 62573 || || ||| | ||||| | ||| |||| || ||| Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483 Query 62574 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62633 | || || || || | |||||| || || | ||||| || || || || || ||| Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542 Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693 || || || || || ||||| || || || || |||||| | || ||||| || Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 || || | || || | ||| || | ||||| || ||||| || || |||| ||| Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662 Query 62754 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62812 | ||||| | || || |||||||||| ||||| || |||| ||| ||||| || || Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721 Query 62813 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 ||| |||| || | | ||||| || || || ||||| ||| ||||| || | Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780 Query 62872 CTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 | | ||||| || | || | || || || || ||||| || | |||| || | Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | ||| | ||||| || || || | |||| |||||||| ||||| | |||||| | Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 |||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| | Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT 63110 || ||| | ||| || | ||| | | || | || | || || | | | Sbjct 230961 GACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCC 231019 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 || | ||| ||| | || | | ||||||||| | ||||||| | | || || Sbjct 231020 TCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCC 231079 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||||| || | |||||||| ||||||| || | |||| ||||| |||||| Sbjct 231080 GGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAAC 231139 Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 || ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || || Sbjct 231140 AGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGT 231198 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| | ||||||||| | | ||||| | |||||| |||||||| || || || Sbjct 231199 ATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGC 231258 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | | || |||| || || |||||||| || | |||| || |||||||| || || Sbjct 231259 AAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACAC 231318 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 | | |||||| | ||| || || ||| | || || || || | ||||| Sbjct 231319 ACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 170 bits (188), Expect = 2e-37 Identities = 454/690 (66%), Gaps = 13/690 (2%) Strand=Plus/Plus Query 32988 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33047 ||||| | || |||||| ||| ||| ||||||||||| || |||||||| || ||||| Sbjct 12010 ATCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATT 12069 Query 33048 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 33107 ||||| ||||| | || || | ||||| || || |||||||| || || | | Sbjct 12070 CGTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAG 12129 Query 33108 ttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCAT 33167 || | | | || | || | ||| || ||||| || || ||| | ||||| Sbjct 12130 CTTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCAT 12189 Query 33168 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 33227 || || || ||||| || | | || || | || |||| |||||||||||||| Sbjct 12190 CAGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTC 12249 Query 33228 AATGGATACCGCATC-----TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC 33282 |||| || || || || | | |||||| | || |||| || ||| | Sbjct 12250 GATGGCAACAGCGTCCTTAATGATTTGATAGAT-TCGCG----CTTCGCTTGGTTTGTTG 12304 Query 33283 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 33342 | | ||||| ||||||| ||| ||||| || ||||| ||| ||||| | || Sbjct 12305 ATCAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATG 12364 Query 33343 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33402 || || ||| || ||||| || ||||| | || |||||||| ||||| || || | Sbjct 12365 AGCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCG 12424 Query 33403 GCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33462 || || | || || || || ||||| |||||||| || || | || | ||| || Sbjct 12425 GCAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCG 12484 Query 33463 TAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33519 || | || || || | ||||||| | |||||||| |||||||| || | || Sbjct 12485 TACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCAT 12544 Query 33520 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 33579 ||||| || || || || ||||| | ||| | || | | || || Sbjct 12545 GGCATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTG 12604 Query 33580 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 33639 | | || |||| ||||||||| |||||||| ||||| || |||||||| |||||| Sbjct 12605 TTTAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAG 12664 Query 33640 AAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||| | ||||||| | ||||||||| Sbjct 12665 AAACAACGCGCCTCGGGCACTTGTACTTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622787974695680