Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 399 3e-106
seq19464 170 2e-37
>seq19563
Length=274849
Score = 399 bits (442), Expect = 3e-106
Identities = 990/1491 (66%), Gaps = 30/1491 (2%)
Strand=Plus/Plus
Query 61985 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62041
|||||| | ||||| ||||| | |||| ||| || |||||||| || ||||||||
Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950
Query 62042 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62101
||| || || ||||| || |||| || || || ||||| |||| ||| |||| |
Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010
Query 62102 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62161
| || |||| ||||| ||| | |||||||| ||||||||||||||||| | || ||
Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070
Query 62162 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62221
|||||| || ||||| | || ||||| || ||||| | || || | |||||
Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130
Query 62222 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC-TTG- 62279
| || ||||| || |||| | || ||| || || | || |||| |||
Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGC----AACCAATTCGTTGC 230186
Query 62280 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337
||| |||||||| | | | || |||| | || |||| ||||| |||| || |
Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246
Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397
||||||| || || || || |||| || | ||| || || ||||| ||||| | |
Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306
Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62457
| ||||| || || | ||| || || || |||||||| ||||||||||||| | | |
Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366
Query 62458 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517
|||| | | ||| ||| | || ||| ||||||| | |||| | |||||||
Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426
Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCT 62573
|| || ||| | ||||| | ||| |||| || |||
Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483
Query 62574 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62633
| || || || || | |||||| || || | ||||| || || || || || |||
Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542
Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693
|| || || || || ||||| || || || || |||||| | || ||||| ||
Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602
Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753
|| || | || || | ||| || | ||||| || ||||| || || |||| |||
Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662
Query 62754 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62812
| ||||| | || || |||||||||| ||||| || |||| ||| ||||| || ||
Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721
Query 62813 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871
||| |||| || | | ||||| || || || ||||| ||| ||||| || |
Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780
Query 62872 CTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931
| | ||||| || | || | || || || || ||||| || | |||| || |
Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840
Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991
| ||| | ||||| || || || | |||| |||||||| ||||| | |||||| |
Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900
Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051
|||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| |
Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960
Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT 63110
|| ||| | ||| || | ||| | | || | || | || || | | |
Sbjct 230961 GACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCC 231019
Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170
|| | ||| ||| | || | | ||||||||| | ||||||| | | || ||
Sbjct 231020 TCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCC 231079
Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230
||||||| || | |||||||| ||||||| || | |||| ||||| ||||||
Sbjct 231080 GGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAAC 231139
Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
|| ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || ||
Sbjct 231140 AGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGT 231198
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
|||||| | ||||||||| | | ||||| | |||||| |||||||| || || ||
Sbjct 231199 ATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGC 231258
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | | || |||| || || |||||||| || | |||| || |||||||| || ||
Sbjct 231259 AAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACAC 231318
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460
| | |||||| | ||| || || ||| | || || || || | |||||
Sbjct 231319 ACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369
>seq19464
Length=44290
Score = 170 bits (188), Expect = 2e-37
Identities = 454/690 (66%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 32988 ATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33047
||||| | || |||||| ||| ||| ||||||||||| || |||||||| || |||||
Sbjct 12010 ATCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATT 12069
Query 33048 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 33107
||||| ||||| | || || | ||||| || || |||||||| || || | |
Sbjct 12070 CGTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAG 12129
Query 33108 ttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCAT 33167
|| | | | || | || | ||| || ||||| || || ||| | |||||
Sbjct 12130 CTTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCAT 12189
Query 33168 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 33227
|| || || ||||| || | | || || | || |||| ||||||||||||||
Sbjct 12190 CAGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTC 12249
Query 33228 AATGGATACCGCATC-----TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC 33282
|||| || || || || | | |||||| | || |||| || ||| |
Sbjct 12250 GATGGCAACAGCGTCCTTAATGATTTGATAGAT-TCGCG----CTTCGCTTGGTTTGTTG 12304
Query 33283 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 33342
| | ||||| ||||||| ||| ||||| || ||||| ||| ||||| | ||
Sbjct 12305 ATCAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATG 12364
Query 33343 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33402
|| || ||| || ||||| || ||||| | || |||||||| ||||| || || |
Sbjct 12365 AGCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCG 12424
Query 33403 GCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33462
|| || | || || || || ||||| |||||||| || || | || | ||| ||
Sbjct 12425 GCAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCG 12484
Query 33463 TAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33519
|| | || || || | ||||||| | |||||||| |||||||| || | ||
Sbjct 12485 TACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCAT 12544
Query 33520 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 33579
||||| || || || || ||||| | ||| | || | | || ||
Sbjct 12545 GGCATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTG 12604
Query 33580 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 33639
| | || |||| ||||||||| |||||||| ||||| || |||||||| ||||||
Sbjct 12605 TTTAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAG 12664
Query 33640 AAACATCTAGCCTCGGTAATCTGTACTTCT 33669
||||| | ||||||| | |||||||||
Sbjct 12665 AAACAACGCGCCTCGGGCACTTGTACTTCT 12694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622787974695680
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