Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19980 149 6e-31 seq7231 131 2e-25 seq19464 98.7 1e-15 >seq19980 Length=299602 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || |||||| ||||||| | ||| | || ||| | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| || ||| ||||| ||||| || || ||||||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | |||| || |||||||| ||||| |||| | | | || |||||| ||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| ||||| | |||||||| |||||||| ||||||| Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190 >seq7231 Length=219762 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || ||| | ||||| |||| ||||||| | Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| || | ||||| || ||| ||||||||||| || ||||| ||||| Sbjct 100147 TGATACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCA 100088 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || || |||| | || ||||| |||||||||| | | | | |||||||| Sbjct 100087 ACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAA 100028 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 |||||| ||||| |||||| | |||||||| || ||||| | ||||||||| Sbjct 100027 CATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTCCGCGGAGGAAAA 99976 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| | || ||||| ||||||| | || | ||| | | | Sbjct 100434 ATGCAGATCTTCGTAAAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGC 100375 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 100374 GATACAATCGAAAACGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCAG 100315 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| | || | | ||||| || || ||||| | ||| || | | |||||||| Sbjct 100314 CAAAGGTTAATCTTTGCTGGCAAGCAGCTTGAAGACGGCCGAA-CGCTATCAGACTATAA 100256 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| ||||| |||||| | || || || || | ||| ||||||||| Sbjct 100255 CATTCAGAAAGAGTCTACTCTACACCTCGTACTACGTCTTCGAGGAGGAA 100206 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||| |||||||||||||| ||| | ||||| | || |||| | Sbjct 94129 AAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGA 94070 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| |||||| | ||||| |||||| || |||||||| || || || ||| Sbjct 94069 TCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 94010 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || |||| || ||||| || || || || | | | | || ||| || Sbjct 94009 CAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTAC 93950 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| ||| | || || ||||| Sbjct 93949 AATATACAGAAGGAATCGACTCTTCACCTCGTCCT 93915 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | || ||||| | || ||| | ||| | || | Sbjct 100662 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCT 100603 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| || || ||||||||||| || ||||| |||||| Sbjct 100602 GACACAATTGAGAATGTTAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCAGATCAA 100543 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| |||||||| ||||| | | | | | | ||||| || Sbjct 100542 CAGAGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTACAAT 100483 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || || ||||||| || || ||||| | ||||| Sbjct 100482 ATCCAAAAAGAGTCCACCCTCCATCTTGTTCTTCGACTTCGTGGAGG 100436 >seq19464 Length=44290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| || || || ||||||||||| ||||| || ||||| || || || || | | Sbjct 12037 CTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTGCTC 12096 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 |||||| ||||| ||||| | | || | |||| | | || | ||||| | ||| Sbjct 12097 CATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAGCAG 12156 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAG 119820 ||||| || || ||||| |||||| ||| ||| || | ||||| |||||||||| Sbjct 12157 ACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGC-AGTTCATACCCAACATAG 12215 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTT-TTCAATGTCGACCGCTTC 119869 |||| ||||| || | || |||||| ||| ||| ||| | || || || Sbjct 12216 CGACAGGTAATGCTTCAGT-GAGAAATTCTTGTTCGATGGCAACAGCGTC 12264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478540053890560