Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19563 192 2e-43 seq17800 120 8e-22 seq19464 98.7 3e-15 >seq19563 Length=274849 Score = 192 bits (212), Expect = 2e-43 Identities = 970/1527 (64%), Gaps = 29/1527 (2%) Strand=Plus/Minus Query 363643 GGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGT 363702 || |||| ||||||||| | |||||||||||||| ||| ||| ||||| | ||| Sbjct 231462 GGAATCTACGACACACTTCGTCAATGTGCTCTTATTTCGAAGTCTGCTGGCGGGGTCGGT 231403 Query 363703 GTATCGATCCACAATGTTCG---TGCACAGAACAGTTACATTCGCGGCACAGGGGGATAC 363759 | ||||| | | || ||| | || | || || ||||| ||| Sbjct 231402 ATGAATATCCATTGTATCCGACCTGC-CGGATCG--TATATAGCAGGCACTAACGGAACA 231346 Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 |||||||| | || || ||||||||||||| | || || ||| | || || |||||| Sbjct 231345 TCGAATGGCATTGTGCCAATGCTTCGTGTGTACAATAACACAGCGCGATATGTTGACCAG 231286 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || ||| | || || ||||| || ||| | || || ||||||||||| Sbjct 231285 GGAGGTAATAAGAGGCCGGGTGCTTTTGCGATCTATTTGGAACCATGGCATGCCGATATC 231226 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || | || || || || || | || ||| | || |||||||| Sbjct 231225 TTTGAATTCCTCGATTTGCGCAAGAATACTGGTATTGAAGAACACAGAGCTCGTGATCTT 231166 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||||| |||||||| |||||| |||||| || || |||| | | | ||| Sbjct 231165 TTCTATGGCCTTTGGGTACCTGACCTGTTTATGCGTCGAGTCGAGGAAAATGGCCAGTGG 231106 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGT 364058 || | | ||| | | ||||||| || || ||| ||| ||||| | || | | Sbjct 231105 TCTTTGATGTGCTCCAATCAATGTCCGGGGCTGAGCGACTGT-TGGGGAAAGGAGTTCGA 231047 Query 364059 TGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA-ATTCCCGCACAGA 364117 || ||||| | |||||| ||||| | || | | || | || |||| Sbjct 231046 AAAACTCTACGAGCAATATGAACGCGAGGG-CCGCTTCATGCGCCAGGTAGAAGCCCAGA 230988 Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 | || |||| |||||| | || || ||||| ||||| ||||| || || || || | Sbjct 230987 AACTTTGGTATGCCATTCTCGAAAGTCAAATTGAAACAGGCACACCTTACATCTTATATA 230928 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC---A 364234 ||||| | || |||| ||| ||| ||||| | ||||| |||| ||| || || | Sbjct 230927 AAGATGCTTGTAACCAAAAGAGCAATCAGCAAAATCTTGGAACAA-TCA--AGTGCTCTA 230871 Query 364235 ACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTG 364294 | ||||||| || || || || || || |||| || || | || || || ||||||| Sbjct 230870 ATTTATGTACGGAAATAATCGAGTATTCCTCTCCTGATGAAATCGCAGTTTGCAACCTTG 230811 Query 364295 CGTCGATCGCGCTTCCGGCG-TTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTAT 364353 |||| |||| | || || ||||| || || || | |||||| | || | Sbjct 230810 CGTCACTCGCAC-TCAATCGCTTTGTCAATGAAGGCAAGTTTGACTTTGGAAAACTCAAA 230752 Query 364354 GACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 || || || | || || | || ||| ||||| ||||||| || || |||||| Sbjct 230751 GAGGTTACTAAAGTTGTGACACGAAACCTCAACAAGATTATCGATGTTAACTACTATCCA 230692 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 |||| ||||| |||| | |||| |||||||| |||||||| |||| || || || Sbjct 230691 GTTCCAGAAGCAGAGCATAGCAATAAACGTCATCGACCGATTGGAATTGGAGTCCAAGGG 230632 Query 364474 CTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTA 364533 || || ||| ||| || || | | | ||||| || || || | || Sbjct 230631 CTTGCCGACACTTTCATCATATTGCGTTTACCGTTTGACAGTCCCGAAGCAATGGAACTT 230572 Query 364534 AATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCA 364593 || || |||||||| || || || | | ||| || || |||||| | || Sbjct 230571 AACAAACTAATCTTTGAGACTATCTACTACGGCGCTTTGGAAGCAAGCTGTGATATTGCG 230512 Query 364594 AAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAG 364653 || | || | ||| ||||| ||||| || ||| | || | || | ||| || Sbjct 230511 AAGGTGGAAGGCACGTATGAAACTTACGAGGGTTCGCCTGTATCTAAAGGTATATTGCAA 230452 Query 364654 TTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAAC 364713 | |||| | ||| ||||| || | | ||| |||||| ||||| | || Sbjct 230451 TATGATATGTGGGGCGTCACTCCCAGTTCTCTTTGGGACTGGGCCGCGCTAAAAGCTAAG 230392 Query 364714 GTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACT 364773 || || ||||| ||||| |||| | || || |||||||| || || || Sbjct 230391 ATTGCTAAATATGGTGTGCGCAATAGCCTCCTATTGGCACCTATGCCCACTGCATCGACC 230332 Query 364774 GCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGC 364833 || ||||| || || ||||| || | | | ||||| | ||| ||||| || ||||| Sbjct 230331 GCCCAGATTCTTGGCAACAATGAATCCATAGAACCATATACGAGCAACGCGTACTCACGT 230272 Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893 || || | || || || |||| || || ||| | | ||| | || ||||| | || Sbjct 230271 CGAGTGTTATCAGGTGAGTTTCAAGTGGTCAATCATCATCTACTTAAAGATCTAACAGAA 230212 Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953 || || ||| ||| ||| ||| | | | || |||||| || || ||| Sbjct 230211 TTAGGACTTTGGAATGAGTCGATGCGCAACGAATTGGTTGCTTATAATGGGTCAGTCCAG 230152 Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013 | || | ||||| || | || ||| | ||| ||||||||||| || | Sbjct 230151 AGGCTT---GACATTCCAAAAAACCTTAAGTTGCTCTACCGTACCGTATGGGAGATACCA 230095 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 | || | |||| | ||||| || ||||| || || || ||| |||||| || || Sbjct 230094 CAGAAAAATATCATCAAGATGGCTGCTGATCGTGGAGCCTTCATCGATCAGAGTCAATCA 230035 Query 365074 TTTAACGT--ATTCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 | || || || | ||| | |||| | | |||| | || || ||||| ||||| Sbjct 230034 CTAAATGTCCATCTAGCTGA---AACCAA-TTATGGCAAGTTAACCTCGATGCACTTCTA 229979 Query 365130 CGGGTGGAAATCCGGTCTTAAGACAGG 365156 || |||||| ||||| ||||| || Sbjct 229978 TGGCTGGAAACTTGGTCTCAAGACCGG 229952 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 ||||| || || || || ||| | |||||||| ||| ||||||| || || | || | Sbjct 231888 GTTGAGCGACCACAACACATGCTCATGCGTGTAGCTGTTGGTATTCACGGCACTGACATC 231829 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCC 363563 || || || || ||||||||||| || | |||| ||| ||||||||||||| || Sbjct 231828 GACGCTGCCATAGAAACATATAATCTGATGAGTGAAAAGTGG-TTCACGCACGCCAGCCC 231770 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || ||| |||||| || || ||| || ||| || ||| |||||| | || | || Sbjct 231769 GACGTTGTTCAATGCCGGCACCTGTAGGCCGCAGCTGAGTTCCTGCTTTTTGCTTACCAT 231710 Query 363624 GAAGGACGATTCCATCGAGGGT 363645 ||| || ||||| ||||| ||| Sbjct 231709 GAAAGATGATTCTATCGAAGGT 231688 >seq17800 Length=133550 Score = 120 bits (132), Expect = 8e-22 Identities = 282/412 (68%), Gaps = 24/412 (6%) Strand=Plus/Minus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAG--TTGGTCTTGTCG 111477 |||||||||||||||| || || || ||||| ||| | || ||| ||||| || || Sbjct 12612 GTAAAAATTTGGGATGCCAACGGTTCTCGTGAATTTTTGGA--CAGCCTTGGTTTTACCG 12555 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 || |||||||| ||| | || || || ||||| || || |||||||| || ||||| | Sbjct 12554 CCAGGGAAGAAGGCGATTTAGGCCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGTGCTG 12495 Query 111538 ACTACAAAACCATGCACGAC--TCATATGATTCACAGGGAACTGATCA-ATT--ACAGAA 111592 | |||| || ||||| | | | | | || |||||| |||||| ||| |||| Sbjct 12494 AGTACACAAATATGCATGCCGATTACACGA--ACCAGGGAGTTGATCAGATTGCTCAGA- 12438 Query 111593 TGTCATTGATCA-AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 ||| | | || | | |||| ||| |||| || || |||||| | ||||||| Sbjct 12437 --TCA-TCAGCACACTAAAGAGCAATCCAAACGACCGACGTATTATTCTATCGGCATGGA 12381 Query 111652 A---CCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTT 111708 | | | || ||| ||| ||||| ||||| || ||||| | || || |||| Sbjct 12380 ATGTCTCGGAT---TTGCCAAAGATGGCGCTTCCGCCCTGTCACTGTCTGGCTCAATTTT 12324 Query 111709 ATGTACACGACGG-GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTT 111767 | || | | || || | | ||||| ||| |||| ||||| || || || || || Sbjct 12323 ACGTCGCCAAAGGTGAAG-TCTCATGTCAACTGTACCAGCGCAGCGCCGACATGGGCCTC 12265 Query 111768 GGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC 111819 ||||||||||| |||||||| |||||| || ||||| | | ||||||| Sbjct 12264 GGTGTTCCGTTCAATATTGCCTCTTACGCTCTGCTTACGCACATCATCGCTC 12213 >seq19464 Length=44290 Score = 98.7 bits (108), Expect = 3e-15 Identities = 430/674 (64%), Gaps = 26/674 (4%) Strand=Plus/Minus Query 22291 CCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACA 22350 || ||||| | |||||||| ||| | || || ||||| |||||| |||| | |||| Sbjct 12681 CCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAATGATGGAAAATATTCATTCAGAAATG 12622 Query 22351 TATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGAC----GAAC---AACGAAACTT 22403 |||||| | ||||| | || || | | || | |||| | ||| ||| Sbjct 12621 TATTCTCTTCTGCTAAACACA----TACATCACCGAGTCCACGGAACGTGATCGACTCTT 12566 Query 22404 ATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATG 22463 |||||| ||| || || | || |||||||| ||||| |||||||| | | || Sbjct 12565 ---CCGCGCAATTGAGACAATGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTG 12509 Query 22464 GATG---AACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGG 22520 ||| ||| | || | | | || || ||| || | ||||| |||| || ||||| Sbjct 12508 GATCGCTAACGAGGAGGCTGCGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGG 12449 Query 22521 CATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCC 22580 |||||| || || || ||| || || || ||||| ||||| || | || ||||| Sbjct 12448 CATTTTTTTCAGCGGGGCGTTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATCATGCC 12389 Query 22581 GGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGC 22640 || || || || |||||| | || || || || ||| | || || || || || Sbjct 12388 TGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGC 12329 Query 22641 GTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGAT-- 22698 ||| || | | || || || | || | |||| || ||| | | | || Sbjct 12328 CTGTCTGATGT-TC--AAACACCTGATCAACAAAC---CAAGCGAAGCGCGAATCTATCA 12275 Query 22699 -ATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAG 22757 || |||| | || |||| | |||| |||| | || || ||||| || Sbjct 12274 AATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTCTCACTGAAGCATTACCTGTCGC 12215 Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 | | | ||||| || ||| |||| | ||| ||| | || ||||| |||||||| Sbjct 12214 TATGTTGGGTATGAACTGCGATCTGATGAAGAGATACATTGAGTTCGTTGCTGATCGTCT 12155 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 | || ||| | |||| | || | ||||| || || | ||||| Sbjct 12154 GCTCATCGAGCTCAACTGCCAGAAGCTATGGAAGTCCACGAATCCGTTCGACTTTATGGA 12095 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | ||||| || ||||| || || |||||||| |||||| | |||||||||||||| || Sbjct 12094 GCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTGAAAAACGCGTTGGTGAATACCAGAA 12035 Query 22938 AGCAGGTGTTATGG 22951 ||| |||||||||| Sbjct 12034 AGCGGGTGTTATGG 12021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303012134390336