Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19980 125 6e-24 seq7231 105 6e-18 >seq19980 Length=299602 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || |||||| |||| || | ||||||||| | | | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| || ||| ||||| ||||| || || ||||||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| || ||||| || ||||| |||| | | || ||| || ||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| ||||| | ||| | ||| | ||||||| Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190 >seq7231 Length=219762 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| |||||||||||||| ||| | || || | || || |||| Sbjct 94129 AAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGA 94070 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| |||||| | ||||| |||||| || |||||||| || || || ||| Sbjct 94069 TCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 94010 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||||| || |||||||| || || || | | | || |||||| Sbjct 94009 CAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTAC 93950 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 || || || || ||||| || |||| Sbjct 93949 AATATACAGAAGGAATCGACTCTTCA 93924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||||||| | || ||| | ||||| || ||| | Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||| || || ||||| ||||| ||||| ||||| Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | ||||||||||| ||||| | | | | | || |||||||| Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || ||| | ||| | || || Sbjct 93718 ATTCAAAAGGAGTCGACACTGCATCTCGTCTT 93687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || ||| | || || |||| || || ||| Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| || ||| ||||||||||| || ||||| ||||| Sbjct 100147 TGATACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCA 100088 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| || |||| | || || || |||||||||| | | | || ||||| Sbjct 100087 ACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAA 100028 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 |||||| ||||| ||||| ||||| | ||| | ||| | | |||||| |||| Sbjct 100027 CATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTCCGCGGAGGAAAATAA 99973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| | || ||||| |||| || | || || || | | | Sbjct 100434 ATGCAGATCTTCGTAAAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGC 100375 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 100374 GATACAATCGAAAACGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCAG 100315 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || | || | | |||||||| || ||||| | | ||| || | | || ||||| Sbjct 100314 CAAAGGTTAATCTTTGCTGGCAAGCAGCTTGAAGACGGCCGAA-CGCTATCAGACTATAA 100256 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| ||||| ||||| Sbjct 100255 CATTCAGAAAGAGTCTAC 100238 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || || |||| || | ||||||||| | Sbjct 93443 AATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATC 93384 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | |||||| |||||| |||||||| ||||| ||||| || || Sbjct 93383 CGACACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCA 93324 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| | || || || | || |||| | | | | | | ||||||||| Sbjct 93323 GCAACGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAA 93264 Query 24170 CATTCAAAAAGAA 24182 |||||| || ||| Sbjct 93263 CATTCAGAAGGAA 93251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || ||||| | |||||| | ||||| ||| || Sbjct 100662 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCT 100603 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || ||| || || ||||||||||| || ||||| |||||| Sbjct 100602 GACACAATTGAGAATGTTAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCAGATCAA 100543 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| |||| | | ||| || ||||| ||||| Sbjct 100542 CAGAGGTTGATCTTTGCCGGTAAACAACTTGAAGA 100508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429828855649440