Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 118 1e-21
seq7231 114 1e-20
seq19563 104 2e-17
>seq19980
Length=299602
Score = 118 bits (130), Expect = 1e-21
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081
|||||| | ||| | ||| ||||| |||||||||||||| ||| | ||||| ||
Sbjct 145176 CAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATC 145117
Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
||| ||||| ||||||||| | || || | || || || || || |||||||| |||||
Sbjct 145116 CTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC 145057
Query 131142 GGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200
||| ||| |||| | | | ||| | |||||| | | ||||| || | || | |
Sbjct 145056 T-TGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCG 144998
Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| || ||||| || |||||||||||
Sbjct 144997 TTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | ||| | |||||| || || || |||||||||||
Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || | ||| || || || ||||||| | ||||||||| || ||
Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || ||| ||||| | || | ||||| | ||||| |
Sbjct 144386 ATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACC 144327
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || ||||||| |||||| || ||||| |||||
Sbjct 144326 TCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
||| |||||||||||||| ||||| || | |||||| || || |||||||| ||
Sbjct 144933 GGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCC 144874
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
|| |||| || | ||| || || || || |||||||| ||||| || || |||
Sbjct 144873 GGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTT 144814
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216
| | ||| | ||||| | | ||| | || | ||| | ||| || || || || ||
Sbjct 144813 TACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGT 144754
Query 131217 TTTTACGAAAATCTGCAT 131234
||| |||||||| |||||
Sbjct 144753 TTTGACGAAAATTTGCAT 144736
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| || || | ||| | || ||||||||||| || ||||| || | || ||
Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| ||||| || || || || |||||| | |||||| || || ||||| || ||||||
Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||||||| ||| | | ||| | || || | | || | || | ||| | |
Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
||||| ||||| ||||| ||||| || ||||||||
Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
>seq7231
Length=219762
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||| | |||| || | ||| | ||||||||||||||||| || |||||
Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||| || ||| || || |||||||| || |||| | ||| ||||| ||||||||
Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || ||||| || |||||| ||| | | || | |||||| ||| || |
Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | |||||| || || || || || || || ||||||||
Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||||||||| || || | || | ||||| ||||| || || |||||||||
Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||||||||||||||| ||| | || | ||||||||| || || ||
Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| |||||||| || ||| || ||||| | ||| | || || | ||| | |
Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||||| || |||| ||||| || || || |||||
Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| || || | ||| | ||| ||||| ||||| || ||||| || | ||| || |
Sbjct 100448 CGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCG 100507
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || || || || || || |||| || | ||| || || |||||||| |||||||||
Sbjct 100508 TCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTG 100567
Query 131140 TCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
|| ||||||| |||| | | | ||| | || || | || ||| | || | |||||
Sbjct 100568 TCTTGGATTTTC-GCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAAT 100626
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || ||||| || ||||| ||||| ||||||||
Sbjct 100627 AGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 131010 ACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCAT 131069
||| || | ||| || || | || | || || || || || |||||||| || ||
Sbjct 92574 ACCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAG 92633
Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129
|| | |||||| ||||| || || || |||| || ||||||||||| || |||||
Sbjct 92634 TGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGAT 92693
Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189
||||| ||||| |||||| ||| | | ||| | ||||| | || |||| ||
Sbjct 92694 ACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTC 92753
Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
| ||||| ||| || || || | ||| |||||||| || |||||
Sbjct 92754 CAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103
||||||||||||||||| || || | ||||| ||||| || || || || ||| |
Sbjct 93480 TCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAA 93539
Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163
|| | ||| |||||||| ||||| || || || ||||| |||||| ||| | |
Sbjct 93540 ATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTT 93599
Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223
|| | |||||| ||| || | || | || | || || || || || || || |||
Sbjct 93600 TCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACG 93659
Query 131224 AAAATCTGCATG 131235
|| |||||||||
Sbjct 93660 AAGATCTGCATG 93671
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082
||||| | ||| | || ||||| || |||||||| || || | || || ||
Sbjct 99995 AGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCT 100054
Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142
|| ||||| || || || | |||| | ||| || || ||||||||||||||||||||
Sbjct 100055 TCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCC 100114
Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202
||||| ||||| | || | ||||| |||| || | |||| || | |||
Sbjct 100115 TGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTT 100174
Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || || || ||||||||||||||
Sbjct 100175 TTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206
>seq19563
Length=274849
Score = 104 bits (114), Expect = 2e-17
Identities = 132/179 (74%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 146309 AGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTC 146368
|||| |||||| || | || ||||| | | || || || |||||||||||||||
Sbjct 231716 AGCAAAAAGCAGGAACTCAGCTGCGGCCTACAGGTGCCGGCATTGAACAACGTCGGGCTG 231775
Query 146369 GCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTC 146427
|||||||| || || ||||| ||||||| ||| ||||| || || | | |||||
Sbjct 231776 GCGTGCGTGAACCACTTTTC-ACTCATCAGATTATATGTTTCTATGGCAGCGTCGATGTC 231834
Query 146428 GTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTT 146486
||| ||||| || | ||| || ||||||||||||||||| || ||||| ||||||
Sbjct 231835 AGTGCCGTGAATACCAACAGCTACACGCATGAGCATGTGTTGTGGTCGCTCAACCACTT 231893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471892153528320
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