Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq19980 118 1e-21 seq7231 114 1e-20 seq19563 104 2e-17 >seq19980 Length=299602 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| | ||| | ||| ||||| |||||||||||||| ||| | ||||| || Sbjct 145176 CAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATC 145117 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||| ||||||||| | || || | || || || || || |||||||| ||||| Sbjct 145116 CTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC 145057 Query 131142 GGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 ||| ||| |||| | | | ||| | |||||| | | ||||| || | || | | Sbjct 145056 T-TGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCG 144998 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| || ||||| || ||||||||||| Sbjct 144997 TTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | |||||| || || || ||||||||||| Sbjct 144506 CCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAA 144447 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | ||| || || || ||||||| | ||||||||| || || Sbjct 144446 AGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGA 144387 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | ||||| | ||||| | Sbjct 144386 ATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACC 144327 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||||| |||||| || ||||| ||||| Sbjct 144326 TCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||||||||| ||||| || | |||||| || || |||||||| || Sbjct 144933 GGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCC 144874 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| || | ||| || || || || |||||||| ||||| || || ||| Sbjct 144873 GGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTT 144814 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | ||||| | | ||| | || | ||| | ||| || || || || || Sbjct 144813 TACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGT 144754 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| |||||||| ||||| Sbjct 144753 TTTGACGAAAATTTGCAT 144736 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || ||||||||||| || ||||| || | || || Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || ||||| || || || || |||||| | |||||| || || ||||| || |||||| Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||||| ||| | | ||| | || || | | || | || | ||| | | Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| ||||| ||||| ||||| || |||||||| Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 >seq7231 Length=219762 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||| || | ||| | ||||||||||||||||| || ||||| Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| || || |||||||| || |||| | ||| ||||| |||||||| Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || ||||| || |||||| ||| | | || | |||||| ||| || | Sbjct 93791 GATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAAC 93850 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || || || || || || |||||||| Sbjct 93851 TTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||||||| || || | || | ||||| ||||| || || ||||||||| Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||||||||||||||| ||| | || | ||||||||| || || || Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||||| | ||| | || || | ||| | | Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | ||| ||||| ||||| || ||||| || | ||| || | Sbjct 100448 CGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCG 100507 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || || || || || |||| || | ||| || || |||||||| ||||||||| Sbjct 100508 TCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTG 100567 Query 131140 TCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||||||| |||| | | | ||| | || || | || ||| | || | ||||| Sbjct 100568 TCTTGGATTTTC-GCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAAT 100626 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || ||||| ||||| |||||||| Sbjct 100627 AGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 131010 ACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCAT 131069 ||| || | ||| || || | || | || || || || || |||||||| || || Sbjct 92574 ACCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAG 92633 Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 || | |||||| ||||| || || || |||| || ||||||||||| || ||||| Sbjct 92634 TGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGAT 92693 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 ||||| ||||| |||||| ||| | | ||| | ||||| | || |||| || Sbjct 92694 ACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTC 92753 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||| ||| || || || | ||| |||||||| || ||||| Sbjct 92754 CAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||||||||||||||| || || | ||||| ||||| || || || || ||| | Sbjct 93480 TCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAA 93539 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||| |||||||| ||||| || || || ||||| |||||| ||| | | Sbjct 93540 ATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTT 93599 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | |||||| ||| || | || | || | || || || || || || || ||| Sbjct 93600 TCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACG 93659 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 93660 AAGATCTGCATG 93671 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| | ||| | || ||||| || |||||||| || || | || || || Sbjct 99995 AGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCT 100054 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||| || || || | |||| | ||| || || |||||||||||||||||||| Sbjct 100055 TCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCC 100114 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||||| | || | ||||| |||| || | |||| || | ||| Sbjct 100115 TGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTT 100174 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || |||||||||||||| Sbjct 100175 TTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 >seq19563 Length=274849 Score = 104 bits (114), Expect = 2e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 146309 AGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTC 146368 |||| |||||| || | || ||||| | | || || || ||||||||||||||| Sbjct 231716 AGCAAAAAGCAGGAACTCAGCTGCGGCCTACAGGTGCCGGCATTGAACAACGTCGGGCTG 231775 Query 146369 GCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTC 146427 |||||||| || || ||||| ||||||| ||| ||||| || || | | ||||| Sbjct 231776 GCGTGCGTGAACCACTTTTC-ACTCATCAGATTATATGTTTCTATGGCAGCGTCGATGTC 231834 Query 146428 GTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTT 146486 ||| ||||| || | ||| || ||||||||||||||||| || ||||| |||||| Sbjct 231835 AGTGCCGTGAATACCAACAGCTACACGCATGAGCATGTGTTGTGGTCGCTCAACCACTT 231893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471892153528320