Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7231 114 1e-20 seq19980 111 1e-19 >seq7231 Length=219762 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || || | |||||| || ||||||||||| || || || || | Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||| ||||| ||| | || || || || || ||| ||| Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||| || || ||||| |||||| | | | || |||| ||| || Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGC--CTTCACATTTTCAATTGTATCGCTGGGTTCAA 93849 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||||||| || ||||| || ||||| |||||||| Sbjct 93850 CTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| ||| ||||| || ||||||||||| | | || ||||| Sbjct 92815 AGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCC 92874 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || ||| | || || ||||||||||| || | |||||||||||| Sbjct 92875 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT 92934 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | || || | | | ||||||| ||||| ||| | || || ||| Sbjct 92935 TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTT 92994 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||| ||||||||||||||| Sbjct 92995 TTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 16712 CCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATG 16771 ||||| || | || || | ||| || ||| ||||| || ||||| || ||| | | Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 16772 GTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG 16831 || | | |||||||| ||||| || ||| |||| | || || ||||| ||| | | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 16832 CCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTT 16889 ||||||||||| || |||||| || || | | | |||||| ||||| || Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCT--TTGACATTTTCAATTGTGTCGGATGGCTCGACTT 93396 Query 16890 CCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | | ||||| || || ||||| || || |||||||| ||||||||| Sbjct 93397 CAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||||| || || || || || || ||||| |||| | Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | |||||| || || | ||||| ||||| || || || Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||||| ||| || | | | || || |||||| Sbjct 92277 ATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACC 92336 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| |||||||||||||||| ||| || || ||||| |||||| Sbjct 92337 TCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384 >seq19980 Length=299602 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || ||||| |||| ||| || || ||||| ||||| ||||||||||||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | |||||||| || |||| | || ||||| || || Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||||| ||| || || | | | || |||| ||||| Sbjct 145070 ATTCCTTCCTTGTCTTGAATTTTGGCT--TTAACGTTCTCAATCGTATCGCTTGGCTCGA 145013 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| ||||||||||| |||||||| |||||||||||||| Sbjct 145012 CTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||||| | ||| || |||||||||||||| || |||||||| | Sbjct 144734 CCTCCACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAA 144675 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || | |||||| || ||| | || |||| ||| || || || Sbjct 144674 AGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGG 144615 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| |||| | ||| || | | | ||||| || || Sbjct 144614 ATACCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACC 144555 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| ||||| || || || ||||| |||||||| Sbjct 144554 TCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404987048019520