Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008206.2 Length=78296 Score E Sequences producing significant alignments: (Bits) Value seq19061 188 4e-43 >seq19061 Length=15585 Score = 188 bits (208), Expect = 4e-43 Identities = 240/331 (73%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 49005 ACTGTCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCT 49064 ||||| ||||| || |||| ||||| ||||||||||| ||||| |||| |||||||| Sbjct 14194 ACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGCGGCC 14135 Query 49065 GTCGCAAACTTCACGGTCGTGTCCAATGACCGTTTCCTCAAGGATGGG------GAGTGG 49118 ||||| |||||||| |||| ||| | || | || | | | |||||| Sbjct 14134 GTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGG 14075 Query 49119 CAGGATAAGGACCCCGTGTTCCTCCGCTGCAACGTGTGGCGTGAGTACGCTGAGAACGTC 49178 |||| || | ||||| | ||||||||| | ||||| ||| ||| |||||||| Sbjct 14074 AAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTG 14015 Query 49179 GCTGAGTCGCTGACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAAC 49238 || ||||||||||| | ||| | ||| ||||| ||||||| |||| |||||| Sbjct 14014 GCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCG 13955 Query 49239 TTCGAGGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGGA 49298 | |||| ||||||||| | ||||| |||||||| ||||| || ||||| |||||||| Sbjct 13954 TACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGG 13895 Query 49299 CCCGCTCTGCGTTTCGCCACGGCGAAGGTGA 49329 || | ||||| | | |||| ||||| |||| Sbjct 13894 CCTTCCCTGCGCTACTCCACCGCGAAAGTGA 13864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250359992233696