Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19563 408 5e-109 seq19464 159 4e-34 >seq19563 Length=274849 Score = 408 bits (452), Expect = 5e-109 Identities = 992/1491 (67%), Gaps = 30/1491 (2%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 61896 |||||| | ||||| ||||| | |||| ||| || |||||||| || |||||||| Sbjct 229894 CTTGTCTACAGTGAACTGAATCGCTTGAGC---TGCAGGCTTCGTACGCAGGTAGTACAT 229950 Query 61897 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 61956 ||| || || ||||| || |||| || || || ||||| |||| ||| |||| | Sbjct 229951 TCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATT 230010 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 | || |||| ||||| ||| | |||||||| ||||||||||||||||| | || || Sbjct 230011 GGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGC 230070 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076 |||||| || || || | || ||||| || ||||| | || || | ||||| Sbjct 230071 AGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAG 230130 Query 62077 ATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC-TTG- 62134 | || ||||| || |||| | || ||| || || | || |||| ||| Sbjct 230131 GTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGC----AACCAATTCGTTGC 230186 Query 62135 --ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62192 ||| |||||||| | | | || |||| | || |||| ||||| |||| || | Sbjct 230187 GCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCA 230246 Query 62193 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 62252 ||||||| || || || || |||| || | ||| || || ||||| ||||| | | Sbjct 230247 CTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGG 230306 Query 62253 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62312 | ||||| || || | ||| || || || |||||||| ||||||||||||| | | | Sbjct 230307 ATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGC 230366 Query 62313 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 |||| | | ||| ||| | || ||| ||||||| | |||| | ||||||| Sbjct 230367 TATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAAC 230426 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCT 62428 || || ||| | ||||| | ||| |||| || ||| Sbjct 230427 TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGCGAAC---CCT 230483 Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62488 | || || || || | |||||| || || | ||||| || || || || || ||| Sbjct 230484 -CGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCG 230542 Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGA 62548 || || || || || ||||| || || || || ||||| | || ||||| || Sbjct 230543 TAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGT 230602 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 || || | || || | ||| || | ||||| || ||||| || || |||| ||| Sbjct 230603 AAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGA 230662 Query 62609 CTCTTATTAGAGAT-TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667 | ||||| | || || |||||||||| ||||| || |||| ||| ||||| || || Sbjct 230663 CGTTTATT-GCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTT 230721 Query 62668 GAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62726 ||| |||| || | | ||||| || || || ||||| ||| ||||| || | Sbjct 230722 GAGGTTTCGTGTC-ACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTT 230780 Query 62727 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 | | ||||| || | ||| | || || || || ||||| || | |||| || | Sbjct 230781 CATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAG 230840 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | ||| | ||||| || || || | |||| |||||||| ||||| | |||||| | Sbjct 230841 AGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCT 230900 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 |||| ||||||| |||||| ||||| ||||| | ||| | || || || |||||||| | Sbjct 230901 GATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTT 230960 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTT 62965 || ||| | ||| || | ||| | | || | || | || || | | Sbjct 230961 GACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCC 231019 Query 62966 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCA 63025 || | ||| ||| | || | | ||||||||| | ||||||| | | ||| || Sbjct 231020 TCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCC 231079 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 ||||||| || | |||||||| ||||||| || | |||| ||||| |||||| Sbjct 231080 GGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAAC 231139 Query 63086 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 || ||||| | |||||| || ||| || ||||| | | ||| ||||| || | || || Sbjct 231140 AGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGT 231198 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| | ||||||||| | | ||||| | |||||| |||||||| || || || Sbjct 231199 ATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGC 231258 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | | || |||| || || |||||||| || | |||| || |||||||| || || Sbjct 231259 AAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACAC 231318 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 | | |||||| | ||| ||||| ||||| || || || |||| ||||| Sbjct 231319 ACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 159 bits (176), Expect = 4e-34 Identities = 450/688 (65%), Gaps = 11/688 (2%) Strand=Plus/Plus Query 32346 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 32405 |||| | || |||||| ||| ||| ||||||||||| || |||||||| || ||||| Sbjct 12011 TCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTC 12070 Query 32406 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtt 32465 ||||| ||||| | || || | ||||| || ||||| ||||| || || | | Sbjct 12071 GTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGC 12130 Query 32466 tttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATC 32525 || | | | || | || | ||| || || || || || ||| | |||||| Sbjct 12131 TTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATC 12190 Query 32526 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 32585 | || || ||||| || | | || || | || |||| |||||||||||||| Sbjct 12191 AGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCG 12250 Query 32586 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC----TTCACTCGGTGGATACAA 32641 || | || ||||| | || ||| | | | ||| ||| || ||| | | Sbjct 12251 ATGGCAACAGCGTCCTTAAT----GATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGAT 12306 Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 | ||||| ||||||| ||| ||||| || ||| | ||| ||||| | || | Sbjct 12307 CAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAG 12366 Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 || ||| || ||||| || ||||| | || |||||||| ||||| || || | || Sbjct 12367 CTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGC 12426 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 ||| | || || ||||| ||||| ||||| || || || | || | ||| || || Sbjct 12427 AAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTA 12486 Query 32822 ACCGGCG--CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | || || || | ||||||| | |||||||| |||||||| || | || || Sbjct 12487 CGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGG 12546 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 ||||||||| || || ||||| | ||| | || | | ||||| | Sbjct 12547 CATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGTT 12606 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 | || |||| ||||||||| |||||||| ||||| || || ||||| |||||||| Sbjct 12607 TAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAA 12666 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCT 33026 || | ||||||| | ||||||||| Sbjct 12667 ACAACGCGCCTCGGGCACTTGTACTTCT 12694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633470043660800