Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 131 1e-25
seq7231 129 5e-25
>seq19980
Length=299602
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || |||||||||||| | ||||| ||| ||||||| | || || || | |||
Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| |||||| |||||||| || || || ||||| ||
Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| |||||| ||||||||| || ||| | || ||||||
Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || ||||| || ||| | || ||
Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACT 144719
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| ||| | ||||| | ||||| ||| |
Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | | |||| |||| ||| ||||| ||||| ||||| || || ||
Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAA-GACAAGGAAGGAATTCCCCCCGATCA 145082
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||| || |||||||| | || |||| |||||| | ||| |||||
Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||| || || || ||| | ||||| || || |||||||
Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | || || || ||||||| | ||||||||| | |||
Sbjct 144736 ATGCAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCT 144795
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | ||| | || | ||| ||||| ||||| ||||| || || ||
Sbjct 144796 GATACAATTGAGAACGTAAAGGCCAAGATTCAA-GACAAGGAAGGAATTCCCCCCGATCA 144854
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| | | || |||||||| || || | ||||||| ||||| | || |||||
Sbjct 144855 ACAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAA 144914
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||||||| || ||||| || ||
Sbjct 144915 TATTCAAAAGGAGTCCACCCTCCA 144938
>seq7231
Length=219762
Score = 129 bits (142), Expect = 5e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| |||||||| ||| |||| || | || || ||| | ||
Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| | ||| |||||| ||| || || ||||| || || ||||| |
Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAG-GATAAGGAAGGCATCCCCCCTGATC 92266
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| |||| || || || |||||| | || |||| || || || ||||||||
Sbjct 92265 AGCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACA 92206
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||||||| |||||||| || || || || ||||| | || | ||||||
Sbjct 92205 ATATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCGCCTTCGTGGAGGA 92156
Score = 116 bits (128), Expect = 3e-21
Identities = 170/238 (71%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| | || || ||| | |||||| |||| || || ||
Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||| || || || |||| | || |||| ||| ||||||||||| || || ||||
Sbjct 100147 TGATACCATTGAAAACGTCA---AGGCCAAAATTCAG-GACAAAGAAGGAATCCCTCCTG 100092
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| |||||| || | |||||||| || ||||| | ||||||| ||| ||| | || |
Sbjct 100091 ATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACT 100032
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
| || ||||| ||||| || || || ||| | ||||| || || | |||||||| ||
Sbjct 100031 ATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTCCGCGGAGGAAAATA 99974
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
|| ||| ||||||||| ||||| || || || || || ||| | ||||| | || || |
Sbjct 94134 ACAGAAAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAG 94075
Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|| || ||||| |||||| | ||| ||| ||| || |||||||| |||||||
Sbjct 94074 AGGGATCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCAC 94015
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| || || ||||| | ||||| || ||||| || |||| || | |||||| | ||
Sbjct 94014 CAGATCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCG 93955
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201
|||||||||| || || ||||| || || ||
Sbjct 93954 ATTACAATATACAGAAGGAATCGACTCTTCA 93924
Score = 105 bits (116), Expect = 6e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || | || || | ||||| ||| | |||
Sbjct 100662 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCT 100603
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| || ||||||||||| || || || ||
Sbjct 100602 GACACAATTGAG--AATGTTAAAGCGAAAATCCAA-GACAAAGAAGGTATCCCTCCAGAT 100546
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| || | || |||||||| |||||| | ||||| | ||| || | || |||
Sbjct 100545 CAACAGAGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTAC 100486
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| |||||||| ||||| || ||| | || ||
Sbjct 100485 AATATCCAAAAAGAGTCCACCCTCCATCTTGTTCT 100451
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || |||||||||||||| || || |||| || | || || || | ||
Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || |||||| |||| || |||| ||| ||||| ||||| || || ||||||||
Sbjct 92738 GATACCATCGAGAACGTGAAGGCGAAAATTCA-GGACAAGGAAGGTATCCCGCCTGACCA 92680
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || ||||| | || || | | | || || || |||||
Sbjct 92679 GCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAA 92620
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| || |||||||| ||||| ||
Sbjct 92619 CATCCAGAAAGAATCAACGCTCCA 92596
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| || || | || || ||| | || ||| | ||||| ||| |
Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968
Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || ||| | || || |||| ||| |||||||| || ||||| |||||||
Sbjct 92967 CGACACCATTGAGAACGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCGCCTGACC 92909
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || |||||| | || || | |||||| | || ||||
Sbjct 92908 AACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACA 92849
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || ||| ||| | ||| | |||||
Sbjct 92848 ACATCCAGAAGGAAAGCACCTTGCATCTCGTGCT 92815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433220010329120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |