Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19980 131 1e-25 seq7231 129 5e-25 >seq19980 Length=299602 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| | ||||| ||| ||||||| | || || || | ||| Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| |||||||| || || || ||||| || Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| |||||| ||||||||| || ||| | || |||||| Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCATCTTGTACT 144719 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| | ||||| | ||||| ||| | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | | |||| |||| ||| ||||| ||||| ||||| || || || Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAA-GACAAGGAAGGAATTCCCCCCGATCA 145082 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || |||||||| | || |||| |||||| | ||| ||||| Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || ||| | ||||| || || ||||||| Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || ||||||| | ||||||||| | ||| Sbjct 144736 ATGCAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCT 144795 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | || | ||| ||||| ||||| ||||| || || || Sbjct 144796 GATACAATTGAGAACGTAAAGGCCAAGATTCAA-GACAAGGAAGGAATTCCCCCCGATCA 144854 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || |||||||| || || | ||||||| ||||| | || ||||| Sbjct 144855 ACAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAA 144914 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 144915 TATTCAAAAGGAGTCCACCCTCCA 144938 >seq7231 Length=219762 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||||||| ||| |||| || | || || ||| | || Sbjct 92384 AATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTC 92325 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | ||| |||||| ||| || || ||||| || || ||||| | Sbjct 92324 GGATACCATCGAAAACGTAAAGGCAAAAATTCAG-GATAAGGAAGGCATCCCCCCTGATC 92266 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| || || || |||||| | || |||| || || || |||||||| Sbjct 92265 AGCAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACA 92206 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||| |||||||| || || || || ||||| | || | |||||| Sbjct 92205 ATATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCGCCTTCGTGGAGGA 92156 Score = 116 bits (128), Expect = 3e-21 Identities = 170/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| | |||||| |||| || || || Sbjct 100207 AATGCAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAG 100148 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| || || || |||| | || |||| ||| ||||||||||| || || |||| Sbjct 100147 TGATACCATTGAAAACGTCA---AGGCCAAAATTCAG-GACAAAGAAGGAATCCCTCCTG 100092 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||| || | |||||||| || ||||| | ||||||| ||| ||| | || | Sbjct 100091 ATCAACAGAGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACT 100032 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || ||||| ||||| || || || ||| | ||||| || || | |||||||| || Sbjct 100031 ATAACATTCAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTCCGCGGAGGAAAATA 99974 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| ||||||||| ||||| || || || || || ||| | ||||| | || || | Sbjct 94134 ACAGAAAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAG 94075 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || || ||||| |||||| | ||| ||| ||| || |||||||| ||||||| Sbjct 94074 AGGGATCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCAC 94015 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || ||||| | ||||| || ||||| || |||| || | |||||| | || Sbjct 94014 CAGATCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCG 93955 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||||||| || || ||||| || || || Sbjct 93954 ATTACAATATACAGAAGGAATCGACTCTTCA 93924 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | ||||| ||| | ||| Sbjct 100662 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCT 100603 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||||||||| || || || || Sbjct 100602 GACACAATTGAG--AATGTTAAAGCGAAAATCCAA-GACAAAGAAGGTATCCCTCCAGAT 100546 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || |||||||| |||||| | ||||| | ||| || | || ||| Sbjct 100545 CAACAGAGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTAC 100486 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| |||||||| ||||| || ||| | || || Sbjct 100485 AATATCCAAAAAGAGTCCACCCTCCATCTTGTTCT 100451 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||||||||| || || |||| || | || || || | || Sbjct 92798 ATGCAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCA 92739 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || |||| ||| ||||| ||||| || || |||||||| Sbjct 92738 GATACCATCGAGAACGTGAAGGCGAAAATTCA-GGACAAGGAAGGTATCCCGCCTGACCA 92680 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || ||||| | || || | | | || || || ||||| Sbjct 92679 GCAGCGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAA 92620 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || |||||||| ||||| || Sbjct 92619 CATCCAGAAAGAATCAACGCTCCA 92596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || || ||| | || ||| | ||||| ||| | Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | || || |||| ||| |||||||| || ||||| ||||||| Sbjct 92967 CGACACCATTGAGAACGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCGCCTGACC 92909 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || ||||| || |||||| | || || | |||||| | || |||| Sbjct 92908 AACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACA 92849 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || ||| ||| | ||| | ||||| Sbjct 92848 ACATCCAGAAGGAAAGCACCTTGCATCTCGTGCT 92815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433220010329120