Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq19464 179 4e-40 seq19109 93.3 5e-14 seq1450 86.0 7e-12 seq19210 84.2 2e-11 >seq19464 Length=44290 Score = 179 bits (198), Expect = 4e-40 Identities = 483/733 (66%), Gaps = 7/733 (1%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| || |||||||| ||||| | |||| | || ||| ||||||||| Sbjct 11977 TTAAAAATCGGCGTCTAGTGTGAATACCTGGTCATCT---TTGTTAGCCATAACACCCGC 12033 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| |||||||| ||||| ||||||||||||||| || || ||||| | || || Sbjct 12034 TTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAGGGAAATTTG 12093 Query 92862 ATTCACTA-GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | || || |||||| ||| || | ||| | | | | | |||| | Sbjct 12094 CTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAGCTCGATGAG 12153 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | | |||||| || || || ||||| ||||| ||| || ||||| || | | Sbjct 12154 CAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCATACCCAACAT 12213 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||||||| || || || | || |||| ||||| |||| || || || | ||| Sbjct 12214 AGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTCCTTAATGAT 12273 Query 93040 TTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 || | || | || | | ||||| | | | | ||| |||| | || || | Sbjct 12274 TTGATAGATTCG-CGCTTCGCTTGGTTTGTTGATCAGGTGTTTGAACATCAGACAGGCGA 12332 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 |||| || || | ||||||||| ||||| || | |||||||||||| || | || || | Sbjct 12333 AGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAGGCCAGGCA 12392 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | ||||| || || ||||| || || | ||||| || ||||| || |||| Sbjct 12393 TGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAAAATGCCTT 12452 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || || || |||||||||| ||| || | | || | | |||||| | Sbjct 12453 CGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGTTAGCGATCCACT 12512 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 ||| |||||||| || || |||||||| || || | ||| || || ||| || || Sbjct 12513 CTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGCGCGGAAGAGTC 12572 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 ||| || || || || |||||||| | | | |||||||||||||| |||| Sbjct 12573 GATCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAGAATACATTTCTGAAT 12632 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | ||| ||||| || || || ||||||||||| | || || | | || |||| Sbjct 12633 GAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCTCGGGCACTTGTACTT 12692 Query 93459 CTTGAGAAAATCT 93471 |||| ||||| || Sbjct 12693 CTTGGGAAAACCT 12705 Score = 100 bits (110), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 ||||| || ||||| || || || || ||||| || || |||||||| || | || || Sbjct 13041 CTCTCAACAAGATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGT 13100 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTGAA 93586 || || || | | ||| | | ||| | | || | ||| || || | || || Sbjct 13101 TTGATGAATTCTCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCC 13160 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | |||||| || || | |||||||| || || | ||| ||||||||||| | ||| ||| Sbjct 13161 AAATCGACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATG 13220 Query 93647 TCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 || ||||| ||| ||||| | ||||||||||| ||||| || Sbjct 13221 TCGGAATATTCAATGGGAAAAAGCACAAAACGATTGGGGTTCTC 13264 >seq19109 Length=90404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 |||||| |||||||||||||||||||| |||||||||| |||| | ||| || | || Sbjct 69999 AGTCAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCTCCTCCTACGAGGGC 69940 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 69939 GTGGGTTCGAACCCCACTTCTGACA 69915 >seq1450 Length=5140 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 |||||| |||||||||||||||||||| |||||||||| |||| | |||| | | Sbjct 2749 AGTCAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCT--CCTCGAAAGAGG 2806 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| |||||| Sbjct 2807 GCGTGGGTTCGAACCCCACTTCTGACA 2833 >seq19210 Length=82198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGG 126319 |||| || |||||||||||||||||||| |||||||||| |||| | |||| | | Sbjct 30349 CAGTTAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCT--CCTCGAAAGAG 30406 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| |||||| Sbjct 30407 GGCGTGGGTTCGAACCCCACTTCTGACA 30434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556718466379520