Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19980 178 1e-39 seq7231 140 3e-28 >seq19980 Length=299602 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||||||||| | ||||| |||||| ||||||||||||| || | | | Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC 145023 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||||||||| || ||||| ||||||||| Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || ||||||||| | |||||| ||||| ||||||| |||||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||| | ||| | || || || | || |||||| Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGGT 145191 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||||||||| || || |||| ||||| ||||| | | Sbjct 144280 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCT 144339 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || |||||||| |||||||| ||||| || || || Sbjct 144340 GATACAATCGAAAATGTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACCAG 144399 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||||| || || || || | || ||||||||| Sbjct 144400 CAGAGGTTAATCTTTGCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACAAC 144459 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| ||| | ||| | || ||||| |||| || ||| Sbjct 144460 ATCCAGAAAGAATCGACCCTTCATCTTGTCTTGCGTCTGCGAGGTGGT 144507 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || |||| | |||||||| | | Sbjct 144736 ATGCAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCT 144795 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || || |||||||||||||| || ||||| ||||||||| Sbjct 144796 GATACAATTGAGAACGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 144855 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || ||| |||||| | || || ||||| Sbjct 144856 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAAT 144915 Query 22399 ATTCAAAAAGAATCCACC 22416 |||||||| || |||||| Sbjct 144916 ATTCAAAAGGAGTCCACC 144933 >seq7231 Length=219762 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || ||||| ||||| | || ||||| || || || | Sbjct 92383 ATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTCG 92324 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||||||| || ||||| || || || || ||||| Sbjct 92323 GATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCAG 92264 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||||||||| || || ||||| | |||||| || ||| | ||||||||||| Sbjct 92263 CAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAAT 92204 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || | || || || |||| | || ||||| Sbjct 92203 ATTCAGAAAGAATCAACTCTGCACTTGGTGCTGCGCCTTCGTGGAGG 92157 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| |||||||||| || |||| ||||| |||||| | | Sbjct 100890 ATGCAGATTTTCGTGAAAACCCTAACCGGTAAGACTATCACCCTTGAGGTGGAATCTTCA 100831 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||| ||||||||||||||||||||||| || || ||| Sbjct 100830 GATACAATCGAAAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 100771 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||||| || || || || | || || ||||| Sbjct 100770 CAGAGATTAATCTTTGCTGGAAAACAGTTGGAAGACGGACGTACTCTTTCGGACTACAAT 100711 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| ||||| | ||| | || | || | ||||||||| Sbjct 100710 ATCCAAAAAGAGTCCACGCTCCATCTTGTACTTAGACTTCGCGGAGGT 100663 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| ||||| ||||| ||||| || ||||| ||||||| || || || Sbjct 94130 AAAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGG 94071 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || | |||| ||| || || || || || ||||||||||| || Sbjct 94070 ATCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGA 94011 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || || ||||| ||| ||||||| ||||| |||||||||| Sbjct 94010 TCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTA 93951 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || ||||| || | || | || | || ||||||||||| Sbjct 93950 CAATATACAGAAGGAATCGACTCTTCACCTCGTCCTCCGTTTGCGCGGAGG 93900 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || ||||| | || |||||||| || | | | Sbjct 93026 ATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAGC 92967 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| |||||||||||||| ||||| ||||| || || ||| Sbjct 92966 GACACCATTGAGAACGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGACCAA 92907 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || ||||| | ||||| ||||| | || || |||||| Sbjct 92906 CAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTACAAC 92847 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || ||| |||| | ||| Sbjct 92846 ATCCAGAAGGAAAGCACCTTGCAT 92823 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| || ||| ||||||| || || ||| | | | Sbjct 100434 ATGCAGATCTTCGTAAAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGC 100375 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||| |||||||||||||| |||||||| |||||||| Sbjct 100374 GATACAATCGAAAACGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCAG 100315 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | || || ||| || | || || || ||| Sbjct 100314 CAAAGGTTAATCTTTGCTGGCAAGCAGCTTGAAGACGGCCGAACGCTATCAGACTATAAC 100255 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| ||||| || || |||| Sbjct 100254 ATTCAGAAAGAGTCTACTCTACA 100232 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| || ||| ||| | Sbjct 93670 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGC 93611 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||| || ||||||||||||||||| || || || Sbjct 93610 GATACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 93551 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| | |||||| ||||| || || |||||| Sbjct 93550 CAACGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAAC 93491 Query 22399 ATTCAAAAAGAA 22410 |||||||| ||| Sbjct 93490 ATTCAAAAGGAA 93479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419623399585120